Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03291 ATGATCAATTCCACTGTCAGGCGCAGGACCCATTTAGTTCAATCCTTCTCAGTCGCTTTCCTTTATTGGCTCTACTACGTTTCATGGGCTTCCTCAAGTGGAACATCTTCAGGGTCATCTTTGCTTCAGAACTCTGGTTCAGAGGAGGACTTGCAGGCGTTGATGGATCAGAGGAAGAGGAAGAGGATGATATCAAATCGTGAATCAGCAAGACGATCTAGGATGAGGAAACAAAAGCACTTGGATGATCTTGTTTCCCAAGTGGCTCAGCTCAGGAAGGAGAATCAGCAAATACTCACAAGTGTTAACATCACCACACAACAGTACTTGAGTGTTGAGGCTGAAAACTCAGTGCTTAGAGCTCAAGTGGGAGAGCTAAGCCACAGGTTAGAGTCTTTGAATGAGATCATTGAGGTCTTAAATGCAAGCAGTGGGGTTTTTGGAGCAACCAACTTCATTGAGCCAGCCAATAGCTTCTTCTTCAACCCATTAAATATGTCCTATATGAACCAGCCCATTATGGCCTCTGCAGACAACATACTTCAGTGCTGA 552 0.4475 MINSTVRRRTHLVQSFSVAFLYWLYYVSWASSSGTSSGSSLLQNSGSEEDLQALMDQRKRKRMISNRESARRSRMRKQKHLDDLVSQVAQLRKENQQILTSVNITTQQYLSVEAENSVLRAQVGELSHRLESLNEIIEVLNASSGVFGATNFIEPANSFFFNPLNMSYMNQPIMASADNILQC. 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03291 183 Gene3D - 56 111 - -
Seca3g03291 183 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 56 119 IPR004827 GO:0003700|GO:0006355
Seca3g03291 183 MobiDBLite consensus disorder prediction 55 76 - -
Seca3g03291 183 Coils Coil 74 101 - -
Seca3g03291 183 SUPERFAMILY Leucine zipper domain 58 110 IPR046347 GO:0003700|GO:0006355
Seca3g03291 183 Pfam bZIP transcription factor 58 104 IPR004827 GO:0003700|GO:0006355
Seca3g03291 183 FunFam BZIP transcription factor 56 107 - -
Seca3g03291 183 CDD bZIP_plant_GBF1 59 109 IPR045314 GO:0003700|GO:0006355
Seca3g03291 183 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 61 76 IPR004827 GO:0003700|GO:0006355
Seca3g03291 183 SMART brlzneu 54 118 IPR004827 GO:0003700|GO:0006355
Seca3g03291 183 PANTHER BZIP TRANSCRIPTION FACTOR 44 31 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03291 Seca-Chr3 59686565 59687331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03291 52 181 bZIP Transcription Factor Family AT4G34590 60.145 3.52e-51 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca3g03291 bZIP_1 2.8e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03291 K25786 - gmx:100101862 230.72