Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03290 ATGATGGAAAAGAGAAACTTTTCTGAATTCATATCAGAGCTAATAGCTCTGGGCGATGAGGTTGTTTCGTTTGCTAAGAATCATGAAATTGTCATAGACGCTTTCTCTCAGTTTGCCATGTTGGTTGAGAAATTTGCACCAATCTTCAATGATTTGAGGAACAAAAGCACAATCATGGACAAGCCAGCTATTAGAAAGTCGTTGGAATCTCTTGAGAATGAGCTTCACCGTGCTAAAGCTTTGATCAAAAGTCACCATTTGGGAGAGCCTATCCAACAAATTGAGGACATAACGCATGATCTTGGTCGATCATTAGGCCTGTTCCTTGTGGCTAGTCTTGAACTTGAAGTGTCCATAAGTTTTAGAGAAAAGATTAGTACATTGCAAAAACAGTTGATGAATGCAAGATTTGGTGGGAATACCAGCCTAACTTCAAGTCCAATATCAAAGTTTGTCATTGCCAGTGCTGTGAAGGTGGAAGGGGAAATAGAAGAGGAAATAATTAATGTTACTATTGATGATATTGTACTGCAACTTAAGAATGGTGATGCTGAAGAATTTGCAATTGCACTTTTAAGACTAAAGAAGTTCATCAGGGAAGGACAACTGGATAGCAGTGTAATTAATGAGGAAGCTGTTCTTTTTATTCTTTTTAATCGTCTAAGTTCATGTAAGGCATATAGGCTGAGCATCATTCAATTGCTAAGAAGCATTGCTTTGGGAAATGATGAGACAAAGGAGAAGATGACAGATATTGAGTTTTTATCAGCAGTGGTGAAGTCTCTGGCAAGGGATGCAGAAGAGAGGAGGGAAGCAGTGGGACTGTTGTTAGAGCTCTCTCACATTCCTGCAGTTAGACGGAATATTGGAAGAATTAAGGGGTGTATTGTTATGTTAGTTTCGATCCTGAATGGAATTGACCCTGTTGCTTCAAATGATGCAGCAAAGTTGTTGGATATATTATCCAGCAATACTCAAAATGCACTCAATATGGCTGAGGCTGGTTACTTTCGGCCACTAGTGCAGTATTTGAAGAAAGGGTCTGACATGAACAAGATCCTTATGGCAACAGCACTTTCTAGGTTGATGCTTACTGATCATAGCAAACTTTCCCTTGGACGAGATGGGGCAATTGAGTCCCTTGTCAAAATGTTTAATTCTGGGAAACTTGAGTCCAAGTTATCTGCTCTAAATGCACTGCAAAATCTTTCCAGTTTGACAGAAAATGTGCAGCGTCTCATCAGAACTGGAATTGCAGGATCTCTACTGCAACTTCTTTTTTCTGTAACATCTGTGCTCATGACTCTGCGGGAGCCTGCATCAGCTATTCTTGCAAGCATTGCTCAGTCAGAATCCTTTCTTGTTAATCAAGATGTGTCTCAACAAATGCTTTCACTTTTGAATCTTACCTGCCCAGTAATTCAAGGTAATCTTTTAGAAGCTCTAAATAGCATTGCTTCCCATCCTGGTGCTTCTAAAGTGAGAAGAAAAATGAAGGAAAAATGTGCACTTGAGCTAATTTTACCCCTTCTGAAGGGAACCAAAACTGAAATACGGAGCAAGGCCTTGAATTTGCTGTATACTCTCTCCAAAGATCTAACAGATGAACTGAGTGAACATCTTGATGAAGCTCATCTTTTCAACATTGTTAATATTGTCTCATCAACAACATCAGATAGTGAAAAGGCTGCTGCTGTTGGCATACTGAGTAATCTTCCTGTTCATGATAATAAAGTGACAGATGCACTAAAGAGAGCAAATTTGTTGCCCATTTTGGTGTCCATTATGGATTCAAGCACAGGAAGTAACTCGCGCACAAGATGTAGCATAGTGGAGAGCATTGCAGGTATTATAATCCGATTCACACATTCCTCTGACAAGAAACTACAACGTCTTTCAGCAGAACATGGGGTGATTCCTTTGCTTGTAAAACTCCTCTCAAGTGGTTCAACAATCACAAAATTCAGAGCTTCAAGCTCTCTGGCTCAACTATCACAGAATTCTGTGTCTCTTAAGAGGTCTAGGAAGTCAAGGTGGTTGTGTGTTTCTCCCTCAATGGATGCATACTGTGAAGTTCATGATGGCTATTGCTTTGTGAACAGCACATTTTGTTTGGTCAAGGCAGGTGCTGTTTCTCCCCTTATCCAAATATTGGAAGATAAGGATGAGGAAGCAGTGGAAGCTGCCCTTAGTTCCCTTTCAACTCTCTTGCAAGATGAAATCTGGGAAGGTGGTGTTAATTGCATAGCTAAATTGTCAGGTGTAGAGGCTATTGTAAAAATTTTAGAAGTAGGTGATGTGAAGGTTCAAGAAAAAGCACTATGGATGTTGGAGAGAATATTCAGGGTTGAAGAACACAGAATAAAATATGGAGAATCCGCTCAGGTGGTTCTTATTGATTTGGCACAGAAGAGTGATTCTAGATTGAAGTCAACAGTTGCAAAAGTTTTGGCAGTGTTGGAGCTCCTGCAAGCTCAATCTAGTTATTTCTGA 2493 0.3991 MMEKRNFSEFISELIALGDEVVSFAKNHEIVIDAFSQFAMLVEKFAPIFNDLRNKSTIMDKPAIRKSLESLENELHRAKALIKSHHLGEPIQQIEDITHDLGRSLGLFLVASLELEVSISFREKISTLQKQLMNARFGGNTSLTSSPISKFVIASAVKVEGEIEEEIINVTIDDIVLQLKNGDAEEFAIALLRLKKFIREGQLDSSVINEEAVLFILFNRLSSCKAYRLSIIQLLRSIALGNDETKEKMTDIEFLSAVVKSLARDAEERREAVGLLLELSHIPAVRRNIGRIKGCIVMLVSILNGIDPVASNDAAKLLDILSSNTQNALNMAEAGYFRPLVQYLKKGSDMNKILMATALSRLMLTDHSKLSLGRDGAIESLVKMFNSGKLESKLSALNALQNLSSLTENVQRLIRTGIAGSLLQLLFSVTSVLMTLREPASAILASIAQSESFLVNQDVSQQMLSLLNLTCPVIQGNLLEALNSIASHPGASKVRRKMKEKCALELILPLLKGTKTEIRSKALNLLYTLSKDLTDELSEHLDEAHLFNIVNIVSSTTSDSEKAAAVGILSNLPVHDNKVTDALKRANLLPILVSIMDSSTGSNSRTRCSIVESIAGIIIRFTHSSDKKLQRLSAEHGVIPLLVKLLSSGSTITKFRASSSLAQLSQNSVSLKRSRKSRWLCVSPSMDAYCEVHDGYCFVNSTFCLVKAGAVSPLIQILEDKDEEAVEAALSSLSTLLQDEIWEGGVNCIAKLSGVEAIVKILEVGDVKVQEKALWMLERIFRVEEHRIKYGESAQVVLIDLAQKSDSRLKSTVAKVLAVLELLQAQSSYF. 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03290 830 Gene3D - 174 493 IPR011989 -
Seca3g03290 830 Gene3D - 494 679 IPR011989 -
Seca3g03290 830 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 169 830 - -
Seca3g03290 830 Coils Coil 61 81 - -
Seca3g03290 830 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 376 418 IPR000225 GO:0005515
Seca3g03290 830 SUPERFAMILY ARM repeat 171 426 IPR016024 -
Seca3g03290 830 SMART arm_5 626 666 IPR000225 GO:0005515
Seca3g03290 830 SMART arm_5 742 782 IPR000225 GO:0005515
Seca3g03290 830 SMART arm_5 698 738 IPR000225 GO:0005515
Seca3g03290 830 SMART arm_5 324 364 IPR000225 GO:0005515
Seca3g03290 830 SMART arm_5 491 531 IPR000225 GO:0005515
Seca3g03290 830 SMART arm_5 365 405 IPR000225 GO:0005515
Seca3g03290 830 SMART arm_5 242 281 IPR000225 GO:0005515
Seca3g03290 830 SMART arm_5 576 623 IPR000225 GO:0005515
Seca3g03290 830 Pfam Armadillo/beta-catenin-like repeat 704 736 IPR000225 GO:0005515
Seca3g03290 830 SUPERFAMILY ARM repeat 357 785 IPR016024 -
Seca3g03290 830 Gene3D - 696 828 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03290 Seca-Chr3 59632250 59635884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03290 182 830 U-box Gene Family AT1G76390 28.674 2.27e-45 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03290 K08332 - gmx:102659538 1199.11