Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03288 ATGAAGTTCTGTAAAAAATACCAAGAGTACATGCAAGGTCAGGAGAAGAAGCTTCCAGGGGTTGGCTTCAAGAAGCTCAAGAAAATCTTGAAGAAATGCAGGAATGACCGTGAATACCACAAAGGCCTCAATAATGCATCCCTTGGCAACAGAACCTGTCCTGACCATTGCCCAGTGTGCGATGGGACATTCTTCCCTTCCCTTCTCAATGAAATGTCAGTTATAGTTGGCTGCTTTAATCAGCATGCGAAGAAATTGCTTGAGCTACATCTCTCTTCTGGCTTCAGAAAGTGCCTTTTATGGTTCAAAGGCAAATTACAAGGGAACCATACTGATCTGATTCAAGAAGGCAAAGATCTGGTCACTTATGCACTCATAAATGCCATTGCCATTCGAAAAATACTAAAGAAATATGATAAGGCGTGTCGTTCTGTTCTGTTCTGTTCTGTTTTGCTGTTTTGTTTTCATCAGAAGATAAACATGCTGATGAGGAGTGTTTTGCAGATTCATTATTCCAAGCAAGGGCAATTATTCAAGTCACAGGTCCAGAGTATGCACAAGGAAATTCTTCAGAGTCCCTGGCTTTGCGAACTTATAGCATTCCACATCAATTTAAGGGAAACTAATGACAAGTCAAGAAATGCATCTTCTTTGTTCGATGAATGTTCTCTTACATTTAAGGATGGAAAACCATCTCTTACCTGTGACATCTTTGATTCTATCAAAATTGATATTGACTTGACTTGTTCTATTTGTTTGGACACAGTATTTGATCCAGTTTCTCTGACTTGCGGCCATATTTTCTGCTATATTTGTGCCTGCTCAGCTGCATCAGTATCTATTGTTGATGGTCTTAAGGCAGCAGATCCTAAACAGAAATGTCCTCTATGTCGAGAGGGTGCAGTTTATAAAGGTGCTGTGCACTTGGATGAACTAAATATTTTATTAGGCCGAAGCTGTGGTGAATATTGGGAGCAAAGGCTTCAGACAGAGAGGGTAGAGAGGATCAAGCAAATAAAGGAACACTGGGAATCACAGTGTAGGGCATTAACTGGCGTCTAA 1062 0.4049 MKFCKKYQEYMQGQEKKLPGVGFKKLKKILKKCRNDREYHKGLNNASLGNRTCPDHCPVCDGTFFPSLLNEMSVIVGCFNQHAKKLLELHLSSGFRKCLLWFKGKLQGNHTDLIQEGKDLVTYALINAIAIRKILKKYDKACRSVLFCSVLLFCFHQKINMLMRSVLQIHYSKQGQLFKSQVQSMHKEILQSPWLCELIAFHINLRETNDKSRNASSLFDECSLTFKDGKPSLTCDIFDSIKIDIDLTCSICLDTVFDPVSLTCGHIFCYICACSAASVSIVDGLKAADPKQKCPLCREGAVYKGAVHLDELNILLGRSCGEYWEQRLQTERVERIKQIKEHWESQCRALTGV. 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03288 353 CDD RING-HC_BAH1-like 239 312 - -
Seca3g03288 353 ProSiteProfiles Zinc finger RING-type profile. 249 298 IPR001841 -
Seca3g03288 353 ProSiteProfiles SPX domain profile. 1 152 IPR004331 -
Seca3g03288 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 238 351 IPR013083 -
Seca3g03288 353 SMART ring_2 249 297 IPR001841 -
Seca3g03288 353 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 168 352 IPR033326 -
Seca3g03288 353 Pfam Zinc finger, C3HC4 type (RING finger) 246 299 - -
Seca3g03288 353 ProSitePatterns Zinc finger RING-type signature. 264 273 IPR017907 -
Seca3g03288 353 SUPERFAMILY RING/U-box 242 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03288 Seca-Chr3 59619282 59621737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03288 246 298 C3H Transcription Factor Family AT4G28270 41.379 2.09e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03288 K16275 - gmx:100787904 565.459