Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03287 ATGGGAAACAAGAAAGAGATGAGAAGCTATGCGTGTTATATGCTAGTATTGTGTCTTACCTTCATTTGGTGGTTCCGCGTAACAGTGTGCTCTTCATTCAGTGATTTGGAAGCGCTGCTAAAGCTGAAGGATTCCATCAAGGGAAAGGAAGCCAAACACGATGCACTGCAAGACTGGAAGTTTTCGTCGTCACTTTCGGCACACTGTTCATTTTCTGGGGTAACATGTGACCAAAACCTCCGTGTGATTGCTCTCAACGTGACAGGCGTTCCTCTCTTCGGGACCCTTCCGCGGGAGATCGGAATGCTTGACAAGCTGGAGAATCTCACCATCTCCATGGACAATCTCACCGGCACTCTCCCTATGGAGCTTTCCAACCTCACTTCGCTTAAGATCCTCAACGTCTCTCACAACGGCTTCTCCGGCAACTTTCCCGGTAACATCACCTTCCGCATGACCAAACTGGAGGTCCTCGACGCTTACGACAACAACTTCAACGGATCACTTCCTGAGGAAATCGTCCAACTCACGGAACTCAAGTACCTCCACCTCGGCGGGAACTATTTTTCCGGCACGATACCGGAGAGTTACTCCGAGTTTCAGAGCTTGGAGTATTTGTGCTTGAACGCAAACAGCTTAACTGGCAAGATTCCCAAGAGCTTAGCCAAGTTGAAGATGTTGAAGGAACTGTTTCTCGGCTACACCAATGCTTTCGATGGAATTCCACCGGAGCTTGGTTCCATTGAATCTCTGAGACTGCTTGACTTGTCTAGCTCCGGCCTCAGCGGAGAGATTCCACCGAGCTTGGGCAATTTGACAAACCTCCACACGTTGTTCTTGCAAATGAACAACCTCTCTGGAACACTTCCGCCGCAGCTATCTTCCATGATGAGTCTCATGTCGCTGGACCTCTCCTACAACAACCTCACCGGATTGATTCCGGAGAGCTTCTCCCAGCTTAAAAACCTCACTCTCATGAACTTCTTCAAGAACAACTTCCGCGGCCCCATCCCCTCCTTCGTCGGAGACCTTCCCAATCTGGAAACGCTTCAGCTTTGGGAGAACAACTTCTCCTTCGTGCTGCCTCAGAATTTGGGTCAAAATGGGAAGTTCAAGTACTTCGACGTGACGAAAAACCATCTCACAGGATTGATCCCTCCGGATTTGTGCAAAGGAGGGAGGTTGCAAACGTTCATTCTCACCGATAACTTCTTCGACGGTCCAATCCCAAACGGAATCGGCGAGTGCAAGTCACTCACCAAGATCCGAGTCGCCAATAACTACCTAGACGGGCCGGTTCCCCCTGGGATTTTCAAACTACCTTTAGTTACAATAATGGAACTGAATAACAACCACTTTAACGGCCAACTGCCTTCCGTGATTTCCGGCGATTCTCTCGGTACGCTCACTCTTTCAAACAACTTATTCACTGGGAGAATTCCCCCTGAGATGAAAAACCTCAGAGCGTTACAGGCTTTGTTGCTGGACGCCAATGAGTTCGTTGGCGAAATCCCAGGGGAAGTGTTTGAAATACCAAGGCTGACGAAGGTCAACATAAGCGGCAACAATCTCACAGGTCCAATCCCAACGACGATTACTCACTGCGTTTCGCTGACTGCCGTTGACCTGAGCCGGAACATGCTGGACGGCGAGGTTCCGAAGGGGATGAAGCTCCTGAAGGACTTAAGCATTTTGAATCTGTCCCGTAACCATATATCTGGGCCAGTTCCCGACGAGATTCGATTCATGACGAGCCTCACCACTCTGGATCTCTCCAACAACAATTTCACCGGCAGTATCCCCACCGGGGGTCAGTTTTTAGTCTTCAACGACAAGTCGTTTTATGGGAACCCCAACCTCTGTTTCCCCCACCAGACCTCTTGCCCTTCCTTGATCTACCTATCAACGAAAAGCCATAGCAAAACGGCGAGGGTGAAAGCCGTCGTGATCGGGATTGCACTCGCCACCGCGGTGCTGCTGGTGCTGGTGACGTTGCACGTGACGAGGAAGAGAAAGCTGCACAGATCAAAGGCGTGGAAGCTGACAACGTTTCAGAGGCTAGACTTCAAAGCGGAGGACGTGGTGGAGTGCCTGAAGGAAGAGAACATAATAGGGAAAGGAGGAGCAGGGATCGTGTACAGAGGGTCCATGCCAAACGAAACGGACATAGCAATAAAGCGTTTAGTTGGGCAAGGAAGTGGGAGAAACGATTACGGGTTCAAAGCGGAGATAGAGACGCTGGGGAAGATAAGGCACAGGAATATAATGAGGCTTCTGGGGTATGTTTCGAACAAGGACACTAACTTGTTGCTGTATGAGTACATGCCGAATGGGAGCTTAGGGGAATGGCTGCATGGGTCGAAGGGTGGGCACTTGAGGTGGGAGATGAGGTACAGGATTGCGGTGGAAGCAGCTAAAGGACTTTGCTATTTGCACCATGATTGTTCCCCTCTTATCATTCACAGAGATGTCAAGTCCAATAACATATTGCTAGATGCAGACTTTGAGGCCCATGTCGCCGATTTTGGACTTGCCAAGTTCTTGTACGACCCAGGAGCCTCTCAGTCTATGTCCTCCATCGCTGGCTCCTACGGCTACATTGCTCCAGAGTATGCTTACACGCTGAAAGTGGACGAGAAAAGTGACGTGTATAGCTTTGGCGTAGTGCTGTTGGAGCTGATCGTAGGAAGAAAGCCAGTGGGTGAATTTGGAGATGGCGTGGACATTGTTGGATGGGTGAATCAAACGAGATTAGAACTCTCTCAGCCGTCGGATGCGGCATTGGTGTTAGCAGTGGTGGACCCACGCCTCACAGAGTATCCTTTGACAAGTGTCATCCATATGTTCAATATAGCTATGATGTGTGTTAAAGAAATGGGGCCCTCAAGGCCTACCATGAGGGAAGTTGTTCATATGCTCACCAATCCTCCTCCACAGTCTACCACTCATCACAACCTAATTAATCTCTAG 2970 0.497 MGNKKEMRSYACYMLVLCLTFIWWFRVTVCSSFSDLEALLKLKDSIKGKEAKHDALQDWKFSSSLSAHCSFSGVTCDQNLRVIALNVTGVPLFGTLPREIGMLDKLENLTISMDNLTGTLPMELSNLTSLKILNVSHNGFSGNFPGNITFRMTKLEVLDAYDNNFNGSLPEEIVQLTELKYLHLGGNYFSGTIPESYSEFQSLEYLCLNANSLTGKIPKSLAKLKMLKELFLGYTNAFDGIPPELGSIESLRLLDLSSSGLSGEIPPSLGNLTNLHTLFLQMNNLSGTLPPQLSSMMSLMSLDLSYNNLTGLIPESFSQLKNLTLMNFFKNNFRGPIPSFVGDLPNLETLQLWENNFSFVLPQNLGQNGKFKYFDVTKNHLTGLIPPDLCKGGRLQTFILTDNFFDGPIPNGIGECKSLTKIRVANNYLDGPVPPGIFKLPLVTIMELNNNHFNGQLPSVISGDSLGTLTLSNNLFTGRIPPEMKNLRALQALLLDANEFVGEIPGEVFEIPRLTKVNISGNNLTGPIPTTITHCVSLTAVDLSRNMLDGEVPKGMKLLKDLSILNLSRNHISGPVPDEIRFMTSLTTLDLSNNNFTGSIPTGGQFLVFNDKSFYGNPNLCFPHQTSCPSLIYLSTKSHSKTARVKAVVIGIALATAVLLVLVTLHVTRKRKLHRSKAWKLTTFQRLDFKAEDVVECLKEENIIGKGGAGIVYRGSMPNETDIAIKRLVGQGSGRNDYGFKAEIETLGKIRHRNIMRLLGYVSNKDTNLLLYEYMPNGSLGEWLHGSKGGHLRWEMRYRIAVEAAKGLCYLHHDCSPLIIHRDVKSNNILLDADFEAHVADFGLAKFLYDPGASQSMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELIVGRKPVGEFGDGVDIVGWVNQTRLELSQPSDAALVLAVVDPRLTEYPLTSVIHMFNIAMMCVKEMGPSRPTMREVVHMLTNPPPQSTTHHNLINL. 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03287 989 FunFam Leucine-rich repeat receptor-like protein kinase 33 195 - -
Seca3g03287 989 Pfam Leucine Rich repeat 584 598 IPR001611 GO:0005515
Seca3g03287 989 ProSiteProfiles Protein kinase domain profile. 698 987 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g03287 989 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 203 974 - -
Seca3g03287 989 SMART serkin_6 698 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g03287 989 ProSitePatterns Serine/Threonine protein kinases active-site signature. 819 831 IPR008271 GO:0004672|GO:0006468
Seca3g03287 989 Gene3D Ribonuclease Inhibitor 28 92 IPR032675 -
Seca3g03287 989 Gene3D Ribonuclease Inhibitor 341 631 IPR032675 -
Seca3g03287 989 Gene3D Ribonuclease Inhibitor 93 340 IPR032675 -
Seca3g03287 989 FunFam LRR receptor-like serine/threonine-protein kinase EFR 339 631 - -
Seca3g03287 989 Gene3D Transferase(Phosphotransferase) domain 1 775 985 - -
Seca3g03287 989 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 242 337 - -
Seca3g03287 989 ProSiteProfiles Leucine-rich repeat profile. 298 319 IPR001611 GO:0005515
Seca3g03287 989 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 667 774 - -
Seca3g03287 989 SUPERFAMILY L domain-like 338 639 - -
Seca3g03287 989 PRINTS Leucine-rich repeat signature 299 312 - -
Seca3g03287 989 PRINTS Leucine-rich repeat signature 583 596 - -
Seca3g03287 989 Gene3D Phosphorylase Kinase; domain 1 663 774 - -
Seca3g03287 989 SMART LRR_typ_2 487 511 IPR003591 -
Seca3g03287 989 SMART LRR_typ_2 344 368 IPR003591 -
Seca3g03287 989 SMART LRR_typ_2 272 295 IPR003591 -
Seca3g03287 989 SMART LRR_typ_2 296 319 IPR003591 -
Seca3g03287 989 SMART LRR_typ_2 152 176 IPR003591 -
Seca3g03287 989 SMART LRR_typ_2 583 606 IPR003591 -
Seca3g03287 989 Pfam Leucine rich repeat N-terminal domain 34 77 IPR013210 -
Seca3g03287 989 Pfam Protein tyrosine and serine/threonine kinase 699 973 IPR001245 GO:0004672|GO:0006468
Seca3g03287 989 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 775 988 - -
Seca3g03287 989 Pfam Leucine rich repeat 178 235 IPR001611 GO:0005515
Seca3g03287 989 Pfam Leucine rich repeat 273 332 IPR001611 GO:0005515
Seca3g03287 989 SUPERFAMILY RNI-like 85 429 - -
Seca3g03287 989 SUPERFAMILY Protein kinase-like (PK-like) 690 973 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03287 Seca-Chr3 59589470 59592991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03287 30 977 Receptor kinase-like Gene Family AT1G75820 62.959 0.0 1232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca3g03287 PK_Tyr_Ser-Thr 3.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03287 K00924 - gmx:732625 1494.95