Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03284 ATGACAATAACTAACAAGTTAAGGAAAGGAGGATTTGGAACAGTTTATAAAGGAGTTCTAGATGATGGAAGAGAGATTGCTATCAAGAGGTTATATTTCAACAACACACATAGAGCAGCAGATTTCTACAATGAAGTCAACATAATTAGTGGTGTGGAACACAAAAATCTAGTCAGACTGTTGGGATGCAGTTGTTCGGGGCCTGAAAGCCTGTTTGTATATGAATTTCTGCCCAATAAAAGTCTTGATCGCTACCTTTTTGATAAAAACAAGGGCCGAGAACTAAACTGGGAGAAGAGATATGAAATTATCATTGGGACAACTGAAGGATTAACTTACCTGCATGAGAACTCCAAAATCAGGATAATTCACAGAGATATAAAATCCAGCAACATCCTATTGGATGCAAAGCAAGTACGAGCCAAAGAGCCAAAGTATCTAGCTCATGGTCAATTAACAGAAAAGGAAGACGTATATAGTCTTGGAGTGTTGTTGCTAGAGATAGTTACTGGTAGACAGAACAACATGAGCAAAGCATCAGAGTGTTCAGACAGCTTAGTTACAGTGGTCAGTTGCATATTCCTTGATTGTTTTGTCCTGATTATTGCTCAACTGTACATCAATCATGGTTAA 633 0.3791 MTITNKLRKGGFGTVYKGVLDDGREIAIKRLYFNNTHRAADFYNEVNIISGVEHKNLVRLLGCSCSGPESLFVYEFLPNKSLDRYLFDKNKGRELNWEKRYEIIIGTTEGLTYLHENSKIRIIHRDIKSSNILLDAKQVRAKEPKYLAHGQLTEKEDVYSLGVLLLEIVTGRQNNMSKASECSDSLVTVVSCIFLDCFVLIIAQLYINHG. 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03284 210 Pfam Protein tyrosine and serine/threonine kinase 2 138 IPR001245 GO:0004672|GO:0006468
Seca3g03284 210 Gene3D Phosphorylase Kinase; domain 1 2 76 - -
Seca3g03284 210 ProSiteProfiles Protein kinase domain profile. 1 210 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g03284 210 Gene3D Transferase(Phosphotransferase) domain 1 78 139 - -
Seca3g03284 210 Gene3D Transferase(Phosphotransferase) domain 1 140 195 - -
Seca3g03284 210 SUPERFAMILY Protein kinase-like (PK-like) 3 178 IPR011009 -
Seca3g03284 210 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
Seca3g03284 210 SMART serkin_6 1 207 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g03284 210 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 144 186 - -
Seca3g03284 210 FunFam Os07g0541700 protein 77 154 - -
Seca3g03284 210 FunFam Putative DUF26-domain receptor-like protein kinase family protein 1 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03284 Seca-Chr3 59554233 59555216 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03284 4 188 Receptor kinase-like Gene Family AT1G70520 63.850 1.49e-89 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g03284 PK_Tyr_Ser-Thr 9.6e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03284 - - gmx:100305420 307.76