Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03272 ATGGCCGAAGCAGAACACGACCATCACACCTCGCCTGAGTACGAGGACCAAGCTAAGAAGAAGAAGAAGCTGCGCAAGAGGAAAAGATCTCGTAAGACCGAACAAGAAGAGGAGAATGGGGTTGCAGAATCTGTGGAGGACAACAAGGCTGAGAATGGGCAACCACATACTGAAGGAGAAGAAGGAGGGGAAGAGAAAAAGGTGGAGAACGCTGCGTCTGGAATAATGAGTGCTCAGCCTTTTTCATCTCTGGGATTGTCTGAACCTACTTCTAAGGCTATTATGGATATGAGTTTCCATCATATGACTCAGATTCAAGCGAGAGCAATTCCGCCTCTTCTGATGGGAAAGGACGTTCTTGGTGCTGCGAGGACAGGTGCTGGAAAAACTCTTGCTTTTTTAATTCCAGCCGTAGAATTGTTGTACAACATTCAGTTTACACCTCGTAATGGAACTGGTGTTGTTGTCATATGCCCAACTAGAGAGCTTGCCATTCAGACACATGCTGTGGCAAAGGAACTACTGAAGTATCATTCACAAACTCTTGGATTGGTTATTGGGGGTTCAGGTAGAAGGGGAGAAGCAGAGCGCATTGTTAAAGGGGTAAATCTGTTGGTAGCAACTCCTGGTCGCCTTCTCGACCACCTTCAGAATACTAAAGGATTCATATATAAAAACTTGAAGTGTCTCATGATTGATGAGGCGGACAGGCTATTGGAAGCAAACTTTGAGGAGGAAATGAAGCAGATCATCAATATACTTCCAAAGAAAAGGCAAACGGCTTTGTTTTCAGCTACACAAACAAAGAAGGTTGAGGATCTTGCCCGTTTGTCATTTCAAACAACTCCCATCTATATTGATGTAGATGATGGGAGAAAAAAGGTCACAAATGAAGGATTGCAGCAGGGCTATGTTGTTGTTTCATGTGCTAAGCGTTTTGTTGTTCTCTACTCATTCTTGAGGAGATATCAATCAAAAAAAGTGATGGTCTTTTTCTCTTCGTGCAACTCTGTCAGATTCCATGCAGATCTTCTCAAGTGTACTGGGTTAGACTGCTTAAATATTCATGGAAAACAGAAGCAGCATGCCAGGACAACTACCTTCTTTAACTTCTGCAAAGCAGAAAAGGGGATCTTGCTCTGTACTGATGTTGCAGCTCGTGGGCTCGACATACCTGATGTGGACTGGATTGTGCAGTATGATCCACCTGATGAACCAAAGGAATATATCCACAGGGTTGGTAGAACAGCTCGTGGGGAAGGTGCAAAAGGAAATGCTTTACTTTTCTTGATTCCTGAAGAATTGAAATTTCTTCGCTATTTGAAGGCAGCAAAGGTTCCTGTGAAAGAGTATGCATTTGATGATAAGAAGCTTGCAAATGTACAATCTCAACTGGAGAAGTTGGTGGCTGGCATTTATCATTTGAACAATATGGCTAAAGATGCTTATAGGTCATATATATTAGCATATAATTCACATTCTATGAAGGATATATTCAATGTTCACCGCCTTGATTTACAGGTAAAATATTCTCATTACATTCTACGTTATATTATTTTCGCTGTTGCTGCTTCTTTCTGTTTTTCAAATCCACCGAAGATAAATCTAAACATAGACAGCAGTGCTTCGAAGCACAGGAAGAAAATACGCAAGGTGGAAGGAGGAAGGCATTGA 1674 0.42 MAEAEHDHHTSPEYEDQAKKKKKLRKRKRSRKTEQEEENGVAESVEDNKAENGQPHTEGEEGGEEKKVENAASGIMSAQPFSSLGLSEPTSKAIMDMSFHHMTQIQARAIPPLLMGKDVLGAARTGAGKTLAFLIPAVELLYNIQFTPRNGTGVVVICPTRELAIQTHAVAKELLKYHSQTLGLVIGGSGRRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRLLEANFEEEMKQIINILPKKRQTALFSATQTKKVEDLARLSFQTTPIYIDVDDGRKKVTNEGLQQGYVVVSCAKRFVVLYSFLRRYQSKKVMVFFSSCNSVRFHADLLKCTGLDCLNIHGKQKQHARTTTFFNFCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGAKGNALLFLIPEELKFLRYLKAAKVPVKEYAFDDKKLANVQSQLEKLVAGIYHLNNMAKDAYRSYILAYNSHSMKDIFNVHRLDLQVKYSHYILRYIIFAVAASFCFSNPPKINLNIDSSASKHRKKIRKVEGGRH. 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03272 557 CDD SF2_C_DEAD 300 430 - -
Seca3g03272 557 FunFam RNA helicase 296 539 - -
Seca3g03272 557 MobiDBLite consensus disorder prediction 1 20 - -
Seca3g03272 557 Gene3D - 11 289 IPR027417 -
Seca3g03272 557 Pfam Helicase conserved C-terminal domain 315 419 IPR001650 -
Seca3g03272 557 SMART DUF4217_3 460 536 IPR025313 -
Seca3g03272 557 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 315 469 IPR001650 -
Seca3g03272 557 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 110 285 IPR014001 -
Seca3g03272 557 Pfam DEAD/DEAH box helicase 103 274 IPR011545 GO:0003676|GO:0005524
Seca3g03272 557 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 79 107 IPR014014 GO:0003724
Seca3g03272 557 CDD DEADc_DDX18 90 287 IPR044773 GO:0003724|GO:0005524
Seca3g03272 557 SMART helicmild6 339 420 IPR001650 -
Seca3g03272 557 Gene3D - 296 516 IPR027417 -
Seca3g03272 557 PANTHER RNA HELICASE 29 460 - -
Seca3g03272 557 MobiDBLite consensus disorder prediction 30 67 - -
Seca3g03272 557 SMART ultradead3 98 303 IPR014001 -
Seca3g03272 557 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 441 IPR027417 -
Seca3g03272 557 Coils Coil 18 38 - -
Seca3g03272 557 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 231 239 IPR000629 -
Seca3g03272 557 MobiDBLite consensus disorder prediction 1 67 - -
Seca3g03272 557 Pfam Domain of unknown function (DUF4217) 461 507 IPR025313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03272 Seca-Chr3 59449755 59457220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03272 64 439 Eukaryotic Initiation Factors Gene Family AT3G19760 27.321 9.70e-46 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03272 K13179 - gmx:100798290 917.146