Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03268 ATGGAGCCCATGGACATCGTTGCAAAAACAAAGGAAGACGCTTCGCTTCCTAAAGCAACAATGACGAAAATTATTAAAGAGATGTTGCCCCCGGATGTGCGTGTGGCCAGAGATGCACAGGATTTATTGATCGAGTGTTGTAATAAATTTTGTTGGATGGTCTATATCATTGTAGAGTTTATAAACCTCGTCTCATCAGAGTCCAATGAAGTCTGTAACAGAGAGGAAAGAAGGACGATTGCTCCTGAGCACGTGTTGAAGGCTTTAGGGGTTCTTGGATTTGGCGAGTACATTGAAGAAGTTTATGCAGCATATGAACAACACAAGCTGGAGACAATGCACGACTCTTTAAAAGGTGCCAAGTGGAGCAACAGAGCCGAGATGACTGAGGAAGAAGCATTAGCTGAGCAGCAAAGGATGTTTGCAGAAGCACGTGCTAGAATGAATGGAGGGGCCATTACTTCCAAACAGCCAGATGCTGACCAAAGTTTAGAGAGCTAA 501 0.4411 MEPMDIVAKTKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCNKFCWMVYIIVEFINLVSSESNEVCNREERRTIAPEHVLKALGVLGFGEYIEEVYAAYEQHKLETMHDSLKGAKWSNRAEMTEEEALAEQQRMFAEARARMNGGAITSKQPDADQSLES. 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03268 166 FunFam Negative cofactor 2 beta 6 153 - -
Seca3g03268 166 Coils Coil 125 145 - -
Seca3g03268 166 SUPERFAMILY Histone-fold 12 153 IPR009072 GO:0046982
Seca3g03268 166 PANTHER PROTEIN DR1 HOMOLOG 1 165 IPR044255 -
Seca3g03268 166 Gene3D Histone, subunit A 4 153 IPR009072 GO:0046982
Seca3g03268 166 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 53 89 IPR003958 -
Seca3g03268 166 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 50 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03268 Seca-Chr3 59398096 59402568 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03268 1 162 CCAAT-DR1 Transcription Factor Family AT5G23090 75.610 1.04e-86 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Seca3g03268 CBFD_NFYB_HMF 9.2e-09 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03268 K21751 - gmx:547635 288.5