Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03267 ATGGCTGGTGGTAGAGGTAGAAGGAAGAAGCACAACTTCAGCAGAATCCATGCATTTTCTTGTGGGAAAGCTTCATTCAGAGGTGAGCATTCACTTATAGGAGGCCCTGGCTTCTCAAGGATAGTCTACTGCAACGAACCAGAACATGGTGGGGCTAGTCTTCTGAATTATGGTGATAATTATGTCAGAACTACCAAATATTCACTTGCCACTTTCCTACCCAAGTCATTGTTTGAGCAATTCAGGAGGGTTGCCAATTTTTACTTCCTTGTCTGTGCAATCTTGTCTTTCCTCCCGCTCTCTCCTTACTCAGCCGTCAGCAATGTTGTTCCTCTTGTGGTTGTGGTTGCTGCTACAATGGGGAAGGAGGCTGTTGAGGATTGGAGGCGGAGAAAGCAGGTCTGTAATATGGTCTTACGATTGTATCAGGATATTGAGGTGAATAACAGAAAGGTTAAAGTGCATTGTGGAAACGGTGTTTTTGACTATACTAAATGGAAGGATTTGAAAGTTGGAGACCTAGTAAAGGTGGAAAAAGATGAATTTTTCCCTGCTGATCTCATCTTACTTTCATCAAGCTATGATGATGCAATTTGCTATGTTGAGACCATGAATCTTGATGGAGAAACAAATCTGAAAATGAAGCAAGCACTAGAAGAAACTTCCAAGTTGCAAGAAGACTCTAGCTTTCAAAATTTCAAGGCTATCATCAACTGTGAAGATCCAAATGCAAATTTATACTCTTTCATAGGCAATATGGAGCTTGAAGATCAACTGTATCCTCTTGCACCTCAGCAGCTACTGCTTAGGGACTCAAAGCTGAGGAACACAAATTTTATATATGGCGTGGTAATCTTTACAGGCCATGATACAAAGGTTAGGCAGAATTGTACAGACCCTCCATCCAAGAGAAGCAAAGTTGAGAGACGGATGGATAAGATCATCTACTTTCTGTTCTTTGTCTTATTTTTCATTTCTTTTATTGGTTCCATTTTCTTCGGGATTGCAACAAGAGAGGACCTTGAAAATGGAGTAATGAAGAGATGGTATCTCAGACCAGATGATACTACAATTTACTTTGATCCAAAGGAAGCACCAGTTGCAGCAATTCTGCAGTTCTTGACCGCACTTATGTTGTATAGTGACTTGATTCCAATTTCTTTGTATGTCTCCATTGAAATTGTGAAAGTTCTTCAAAGCATTTTCATCAACCAGGACGTGCACATGTATTATGATGAAACTGATCGGCCAGCACATGCTCGCACCTCAAATTTGAATGAAGAACTTGGCCAAGTTGAAACAATACTTTCAGATAAAACAGGAACTTTGACTTGCAATTCTATGGAATTTATCAAGTGTTCTATTGCTGGGATTGCCTATGGACGAGGAGTTACAGAAGTTGAGAGAGCTCTAGCCAGAAGAAAAGGATTACCTTTAGGTTATGAGTTGACAGAAGATGGCAATGTTGTAGAGTTTTCTGAAACAAAGTCATCCATTAAAGGTTTTAACTTTGTGGATGAAAGGATCATGAACGGAAATTGGGTCAAAGAGCCTCATGCCAATGTAATCCAGAACTTCCTGCGGTTGTTGGCAGTATGCCATACTGCAATACCTGAAGTTGATGAAGAAACTGGCAAAGTTTCATATGAAGCTGAGTCACCTGACGAGGCAGCTTTTGTAATTGCAGCCAGAGAACTTGGATTTGAGTTTTATGAAAGGACACAGACAACTATTTCAGTGCGTGAAATCAATTCCATATCAGGCAAGACAATTGGAAGGTCCTACAAACTTTTAAACACATTAGAGTTTAGTAGTGCAAGAAAGCGGATGTCTGTAATTGTAAGAGATGAGGAGGGGAAACTGCTACTACTTAGCAAAGGCGCAGACAGTGTCATGTTTGAACGACTTGCAAAGAATGGAAGGGAATTTGAAGAGAAGACTAAGCAGCACATCAATGAATATGCTAATGCTGGTTTGAGGACCTTGATACTTGCATATCGTGAACTTGATGAGGAAGAGTACAATATATTTAATAAAGAATTCATGGAAACCAAGAACATAGTGAGTGCAGATCGGGATCATATTGTAGAGGAAATATCAAAAAAGCTTGAGAAGGATTTAATTCTTCTTGGTGCCACTGCAGTTGAAGACAAACTTCAAAATGGGGTTCCTGAATGCATTGACAAGCTAGCACAGGCAGGGATTAAGCTATGGGTTTTGACTGGTGATAAAATGGAAACAGCAATCAATATTGGGTTTGCTTGCAGTTTACTCAGACAAGGAATGAAACAAATTATAATTAGCTCAGAAACTCCAGAAACCAAATCACTAGAGAAAATGGAGAACAAGTCTGCTGCTGCAGCAGCAATTAAGGCAAGTGTTCTTCATCAATTAAGAGAAGGAATCGCACTACTTGCTGCATTTGATGAAAACTCTGAGGCATTAGCTTTGATCATTGATGGGAAGGCTCTCACTTATGCACTAGAAGATGATGTAAAGGACTTGTTTCTTGCACTTGCCGTTGGTTGTGCTTCTGTTATTTGCTGTCGTTCATCTCCCAAGCAGAAAGCACTTGTATGTTTTCCTTGTGACACTACAGTTACTAGACTAGTAAAGATTAAAACAGGTAGTACTACTCTAGCAATTGGCGACGGGGCAAATGATGTTGGAATGCTCCAAGAAGCAGATATTGGGATTGGTATCAGCGGTGTTGAAGGAATGCAGGCAGTTATGTCTAGTGATATTGCAATTGCCCAATTCCGGTTTCTAGAGCGTTTACTTCTTATGCATGGACATTGGTGTTACAGAAGAATCTCATCAATGATCTGCTACTTCTTTTACAAGAATATTGCCTTTGGCTTCACTCTGTTCTTCTATGATATCTATGCCTCCTTCTCGGGGCAAGATGCATACAATGATTGGTTCCTGTCATTATATAACGTATTCTTCACTTCCCTTCCTGTAATTGCCTTGGGAGTGTTTGACCAGGATGTCTCTAATAGATTATGTCTCAAGTTCCCATTATTATATCAAGAAGGTGTACAAAATGTCCTATTTAGCTGGAAACGGATCCTTGGTTGGGCATTCAATGGAGTCTTGAGTGCTACCATAATATTCTTCTTCTGCATCAAGGCATTTGACAATCAAGCATTCCGCGAAGGAGGGGAAGTTGCTGGGCTGGAATTTCTTGGTGCTACCATGTACACTTGTGTTGTGTGGGTGGTGAATTGCCAAATGGCATTATCTATCAGTTACTTCACTTACATACAACATATATTCATCTGGGGTGGCATTATTTTTTGGTATATATTCCTACTAGCATATGGAGCCATGGACCCCTTGCTATCAACCACTGCCTATAAGATCTTTATTGAAGCTTGTGCACCAGCACTATCTTACTGGCTCATCACTCTACTTGTGCTTGTTGCTTCACTCCTTCCATATTTTACCTATGCTTCAATCCAAATGAGATTCTTCCCTATGTTCCATCAAATGATACAGTGGATAAAAAATGATGGGCAAGCAACTGATCCAGAATATGTTGATGTTGTGCAACAGAGATCAATAAGACACACAACAGTTGGGTTCACAGCTCGTTTTGAAGCATCCAAAGACCGTTTGAAGTCTGAAAACCATTAA 3639 0.4015 MAGGRGRRKKHNFSRIHAFSCGKASFRGEHSLIGGPGFSRIVYCNEPEHGGASLLNYGDNYVRTTKYSLATFLPKSLFEQFRRVANFYFLVCAILSFLPLSPYSAVSNVVPLVVVVAATMGKEAVEDWRRRKQVCNMVLRLYQDIEVNNRKVKVHCGNGVFDYTKWKDLKVGDLVKVEKDEFFPADLILLSSSYDDAICYVETMNLDGETNLKMKQALEETSKLQEDSSFQNFKAIINCEDPNANLYSFIGNMELEDQLYPLAPQQLLLRDSKLRNTNFIYGVVIFTGHDTKVRQNCTDPPSKRSKVERRMDKIIYFLFFVLFFISFIGSIFFGIATREDLENGVMKRWYLRPDDTTIYFDPKEAPVAAILQFLTALMLYSDLIPISLYVSIEIVKVLQSIFINQDVHMYYDETDRPAHARTSNLNEELGQVETILSDKTGTLTCNSMEFIKCSIAGIAYGRGVTEVERALARRKGLPLGYELTEDGNVVEFSETKSSIKGFNFVDERIMNGNWVKEPHANVIQNFLRLLAVCHTAIPEVDEETGKVSYEAESPDEAAFVIAARELGFEFYERTQTTISVREINSISGKTIGRSYKLLNTLEFSSARKRMSVIVRDEEGKLLLLSKGADSVMFERLAKNGREFEEKTKQHINEYANAGLRTLILAYRELDEEEYNIFNKEFMETKNIVSADRDHIVEEISKKLEKDLILLGATAVEDKLQNGVPECIDKLAQAGIKLWVLTGDKMETAINIGFACSLLRQGMKQIIISSETPETKSLEKMENKSAAAAAIKASVLHQLREGIALLAAFDENSEALALIIDGKALTYALEDDVKDLFLALAVGCASVICCRSSPKQKALVCFPCDTTVTRLVKIKTGSTTLAIGDGANDVGMLQEADIGIGISGVEGMQAVMSSDIAIAQFRFLERLLLMHGHWCYRRISSMICYFFYKNIAFGFTLFFYDIYASFSGQDAYNDWFLSLYNVFFTSLPVIALGVFDQDVSNRLCLKFPLLYQEGVQNVLFSWKRILGWAFNGVLSATIIFFFCIKAFDNQAFREGGEVAGLEFLGATMYTCVVWVVNCQMALSISYFTYIQHIFIWGGIIFWYIFLLAYGAMDPLLSTTAYKIFIEACAPALSYWLITLLVLVASLLPYFTYASIQMRFFPMFHQMIQWIKNDGQATDPEYVDVVQQRSIRHTTVGFTARFEASKDRLKSENH. 1213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03267 1212 PRINTS P-type cation-transporting ATPase superfamily signature 882 901 - -
Seca3g03267 1212 PRINTS P-type cation-transporting ATPase superfamily signature 436 450 - -
Seca3g03267 1212 SFLD p-type atpase 418 933 IPR044492 -
Seca3g03267 1212 Gene3D - 556 710 IPR023299 GO:0000166
Seca3g03267 1212 NCBIfam phospholipid-translocating P-type ATPase 57 1167 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Seca3g03267 1212 Pfam Phospholipid-translocating P-type ATPase C-terminal 910 1160 IPR032630 -
Seca3g03267 1212 NCBIfam HAD-IC family P-type ATPase 838 963 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g03267 1212 Gene3D - 711 922 IPR023214 -
Seca3g03267 1212 SUPERFAMILY HAD-like 431 937 IPR036412 -
Seca3g03267 1212 SUPERFAMILY Calcium ATPase, transduction domain A 157 296 IPR008250 -
Seca3g03267 1212 Pfam Cation transport ATPase (P-type) 533 636 - -
Seca3g03267 1212 CDD P-type_ATPase_APLT_Dnf-like 59 1042 - -
Seca3g03267 1212 SFLD Haloacid Dehalogenase 418 933 - -
Seca3g03267 1212 Gene3D - 116 298 - -
Seca3g03267 1212 FunFam Phospholipid-transporting ATPase 710 922 - -
Seca3g03267 1212 ProSitePatterns E1-E2 ATPases phosphorylation site. 438 444 IPR018303 -
Seca3g03267 1212 FunFam Phospholipid-transporting ATPase 552 710 - -
Seca3g03267 1212 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 492 711 IPR023299 GO:0000166
Seca3g03267 1212 FunFam Phospholipid-transporting ATPase 118 298 - -
Seca3g03267 1212 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 29 1173 - -
Seca3g03267 1212 SUPERFAMILY Calcium ATPase, transmembrane domain M 54 1160 IPR023298 -
Seca3g03267 1212 Pfam Phospholipid-translocating ATPase N-terminal 42 107 IPR032631 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03267 Seca-Chr3 59383212 59390724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03267 1 1208 Primary Pumps ATPases AT1G68710 69.194 0.0 1787
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03267 K01530 - gmx:100797039 2013.04