Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03264 ATGGAAAACCAAGAGATCTCAGAACTTCCACCCTTATCTCAAAACCCACACATGAATCTTTCTTTGATGTCTCTTGAAACAGATAAATCATGTGACAAGAAAGAGAGGGGTATCATGAAGATGCCAAAAAGAGCAAACACCAGTGAGAGAAAGTTTCTTGGGGTGAGACAAAGGCCTTCAGGAAGATGGGTTGCTGAGATCAAGGACTCTTCACAGAAACTGAGACTATGGTTAGGAACTTTTGACAGAGCAGAAGAGGCTGCCATGGCTTATGACTCTGCTGCAAGGCTTCTTAGAGGTAGAAATGCCAAGACAAACTTTCCAAACCCAACAGGAACCATGAACACACATGATGAAAGCATCAATTTTTTGGGAAAGAATCCAAGGGCTTACCAACTTCTTAAGCATGCAGTCATGAAGAACCATACAGTTTCCACAATCATGCCTTGGAAAAATCAGATCATGAGAGGGGATTTTGATACCCTTGTTGAGGAAACTATAGTTTGTTCCTCCAGTTCTGAAGAAGGTTCAAGTTTCTGTGGACTTTCAATTGGAAGTTGTAAGGTTTATTCTTCTATTGTTGTTGCTCCTTCTTTCAGTGCTTCTTCCCCTTCTTGTCAAACAGGATCATAA 633 0.4107 MENQEISELPPLSQNPHMNLSLMSLETDKSCDKKERGIMKMPKRANTSERKFLGVRQRPSGRWVAEIKDSSQKLRLWLGTFDRAEEAAMAYDSAARLLRGRNAKTNFPNPTGTMNTHDESINFLGKNPRAYQLLKHAVMKNHTVSTIMPWKNQIMRGDFDTLVEETIVCSSSSEEGSSFCGLSIGSCKVYSSIVVAPSFSASSPSCQTGS. 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03264 210 CDD AP2 51 109 IPR001471 GO:0003700|GO:0006355
Seca3g03264 210 Gene3D AP2/ERF domain 50 109 IPR036955 GO:0003700|GO:0006355
Seca3g03264 210 Pfam AP2 domain 52 100 IPR001471 GO:0003700|GO:0006355
Seca3g03264 210 SUPERFAMILY DNA-binding domain 51 109 IPR016177 GO:0003677
Seca3g03264 210 PRINTS Ethylene responsive element binding protein signature 74 90 IPR001471 GO:0003700|GO:0006355
Seca3g03264 210 PRINTS Ethylene responsive element binding protein signature 52 63 IPR001471 GO:0003700|GO:0006355
Seca3g03264 210 SMART rav1_2 51 114 IPR001471 GO:0003700|GO:0006355
Seca3g03264 210 FunFam ethylene-responsive transcription factor RAP2-11 50 109 - -
Seca3g03264 210 ProSiteProfiles AP2/ERF domain profile. 51 108 IPR001471 GO:0003700|GO:0006355
Seca3g03264 210 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 27 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03264 Seca-Chr3 59353736 59354368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03264 40 109 AP2-EREBP Transcription Factor Family AT5G19790 64.286 6.87e-27 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca3g03264 AP2 7.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03264 K09286 - pvu:PHAVU_003G180000g 256.529