Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03246 ATGAAAGTGAGGTCGGTGAAGCTGAGGGAGGCCCACGCACACAAGGGTGGCCGCCCTTCGTTCTGCTCCGTGGTGTGGGACCAGCAAGCCCAACATCTGGTTACCGCCTCCTCTTCCGATGTGTCCGTTTCCATTCACAATCCCATTCTCCCCTCCGCCACTCCAAGGATCCTCCGTCACCACCGTGACGGCGTCACTGCCTTGGCTCTTAGCCCCAATTCCACTTGCCTTGCTTCCGGATCCGTCGATCACTCCGTCAAGCTCTACAAGTTTCCTGGTGGGGAGTTCGAGACAAATATTACCAGATTCACACTTCCAATACGTTCCCTAGCATTTAACAAGTCAGGGAGTATGTTAGCAGCGGCTGGTGATGATGAGGGTATCAAGCTTATTAACACAGTTGATGGTTCCATTGCTAGGGTCCTCAAAGGGCATAAAGGGCCTGTCACTGGCCTAGCCTTTGACCCCAATGGTGAATACTTAGCATCTCTGGATTCAACTGGAACTGTTATTCTGTGGGAACTCCACTCTGGGAGAATCGTTCACAACCTCAAAGGTATTGCTCCTGACACTGGGGTAGATGTTACAACCATGAATGTTCTTTGTTGGAGTCCTGATGGTGAGACCTTAGCTGTTCCCGGGTTGAGAAACGATGTCGTAATGTATGATAGAGACACGGCTGAGAAGTTGTTTTCTCTGAGAGGGGATCACACACAACCTATATGTTTCTTGTGTTGGTCACCCAATGGGAAGTACATGGCTACTTCTGGTTTGGACAAGCAGCTTCTGATATGGGATGTTAATAGGAAGCAGGACATTGACAGACAGAAGTTTGATGAAAGAGTGTGTTGTATGGCGTGGAAGCCAATTGGGAATGCCTTGGCTGTTATTGATGTTATGGGGAAGTATGGTATATGGGATAATGTCATTCCTTCATCTATGAAGTCTCCAACTGAGGATATACCTATGCAGTACAAGAACAGCAAAGGGCTTCTTTTATTTGATGAGGAGGATCCAGAAAATAGTGTTAGTGGGAGCTTGAGTGATCTTGGTGAAAATAGTAATGGTGAGTCTGAGCCACCTAGCAAGAAAAGATTGCGAAAACAGGCTTTGAGCGAGGAAAATTTAGATGAGGATGAAGGTGATGAAATGACTCTGTTTCCCAAGGTTGAGTCTCACAAGAAACGAAATCGTTCGCACAAGGAAAATTTGGATAATGGGAATGTGGCATTTAGGAGCACCATGGTAACATCTAAGCCAAAGATGCAGGAGGCATTTCAACCAGGATCTACTCCTGTGCAGCCTGGGAAAAGGCGCTTCTTATGCTACAATATGCTTGGAAGTATAACCACTGTTGAACATGATGGATACTCTCACATTGAGATTGATTTTCATGATACTGGAAGCGGTCCACGAGTTCCATCAATGACTGATCATTTTGGATTTACAATGGCCGCATTAAATGAGAATGGGGGCGTCTTTGCAAATCCTTGTAAGGGGGAGAAGAACATGAGCACCCTCATGTATCGCCCATTTAGTAGCTGGGCTAGTAATAGCGAGTGGTCTATGCGCTTTGAAGGAGAAGAAGTGAAGGCTGTTGCACTTGGTGCTGCTTGGGTAGCTGCAGTAACTAGTTTTAACTATCTTCGCATCTTTACTGAGGGTGGTTTGCAGAGATATATTATTTCGCTAGATGGGCCAGTGGTGACTGCATCAGGTTTCAAGGATAAGCTTGCAGTTGTTACTCATGCTTCTGATTGCCTTTCCTCAAATGATCAGGTGTTAGAGTTTAGAGTATTTAATATACCCCATGGAACCCAACCCCTTCGAGGTCGCTTGCCATTAACTCCTGGTTCATTTCTAAGTTGGTTTGGGTTTAGTGAAGAAGGTCAATTGTGTTCATACGATTCCAAGGGTGTGCTAAGGCAATATACAAGCCAATTTGGTGGTAGCTGGCTCCCAGTCTTCAGCAGTGCTATTAAAGAGAAGTCAGATGAAAACTACTGGGTGACGGGGTTGAACACAAGCAAGTTATTTTGTGTAATATGCAAAAAGCCTGATGCCTTCCCACAGGTGATGCCTAAACCTGTTCTCACTCTACTGAATCTTTCATTTCCTCTCGCTTCCTCTGATTTGGGCTCTGAGGCTCTTGAAAACGAGTTTATAATGAACAACATGCATCTCTTTGAGATTCAGAAAAGAATGGAAGAAACGGCTATTGCTGGTTTAGACACTAATTCACTTGACGATGAAGCTTTCAATTTGGAAGCAGCACAAGATAGATGCATACTCAGGCTTATAGCATCCTGCTGCAACAGTGATAAGCTTGAGCGAGCTACTGAACTTGTGAAGCTTTTGTCACTGGAAAAATCAATGAAAGGTGCGATAAAACTTGTAACTGCTCTGAAGCTTCCAAACTTGGCCGAAAGGTTCAGCAGTATATTGGAGGTAAGCCTCCTACATTCTAAAAAAGTACAGTGTGTATATGTAATGTATTGA 2499 0.4486 MKVRSVKLREAHAHKGGRPSFCSVVWDQQAQHLVTASSSDVSVSIHNPILPSATPRILRHHRDGVTALALSPNSTCLASGSVDHSVKLYKFPGGEFETNITRFTLPIRSLAFNKSGSMLAAAGDDEGIKLINTVDGSIARVLKGHKGPVTGLAFDPNGEYLASLDSTGTVILWELHSGRIVHNLKGIAPDTGVDVTTMNVLCWSPDGETLAVPGLRNDVVMYDRDTAEKLFSLRGDHTQPICFLCWSPNGKYMATSGLDKQLLIWDVNRKQDIDRQKFDERVCCMAWKPIGNALAVIDVMGKYGIWDNVIPSSMKSPTEDIPMQYKNSKGLLLFDEEDPENSVSGSLSDLGENSNGESEPPSKKRLRKQALSEENLDEDEGDEMTLFPKVESHKKRNRSHKENLDNGNVAFRSTMVTSKPKMQEAFQPGSTPVQPGKRRFLCYNMLGSITTVEHDGYSHIEIDFHDTGSGPRVPSMTDHFGFTMAALNENGGVFANPCKGEKNMSTLMYRPFSSWASNSEWSMRFEGEEVKAVALGAAWVAAVTSFNYLRIFTEGGLQRYIISLDGPVVTASGFKDKLAVVTHASDCLSSNDQVLEFRVFNIPHGTQPLRGRLPLTPGSFLSWFGFSEEGQLCSYDSKGVLRQYTSQFGGSWLPVFSSAIKEKSDENYWVTGLNTSKLFCVICKKPDAFPQVMPKPVLTLLNLSFPLASSDLGSEALENEFIMNNMHLFEIQKRMEETAIAGLDTNSLDDEAFNLEAAQDRCILRLIASCCNSDKLERATELVKLLSLEKSMKGAIKLVTALKLPNLAERFSSILEVSLLHSKKVQCVYVMY. 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03246 832 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 234 268 - -
Seca3g03246 832 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 183 IPR001680 GO:0005515
Seca3g03246 832 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 58 90 - -
Seca3g03246 832 PANTHER WD REPEAT AND HMG-BOX DNA BINDING PROTEIN 1 824 - -
Seca3g03246 832 ProSiteProfiles Trp-Asp (WD) repeats profile. 58 99 IPR001680 GO:0005515
Seca3g03246 832 FunFam Transducin family protein / WD-40 repeat family protein 195 322 - -
Seca3g03246 832 SUPERFAMILY WD40 repeat-like 22 307 IPR036322 GO:0005515
Seca3g03246 832 CDD WD40 22 310 - -
Seca3g03246 832 ProSiteProfiles Trp-Asp (WD) repeats profile. 234 275 IPR001680 GO:0005515
Seca3g03246 832 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 179 - -
Seca3g03246 832 SMART WD40_4 135 174 IPR001680 GO:0005515
Seca3g03246 832 SMART WD40_4 269 307 IPR001680 GO:0005515
Seca3g03246 832 SMART WD40_4 4 47 IPR001680 GO:0005515
Seca3g03246 832 SMART WD40_4 177 223 IPR001680 GO:0005515
Seca3g03246 832 SMART WD40_4 93 132 IPR001680 GO:0005515
Seca3g03246 832 SMART WD40_4 51 90 IPR001680 GO:0005515
Seca3g03246 832 SMART WD40_4 226 266 IPR001680 GO:0005515
Seca3g03246 832 Pfam Minichromosome loss protein, Mcl1, middle region 425 707 IPR022100 -
Seca3g03246 832 ProSitePatterns Trp-Asp (WD) repeats signature. 253 267 IPR019775 -
Seca3g03246 832 Pfam Anaphase-promoting complex subunit 4 WD40 domain 201 288 IPR024977 -
Seca3g03246 832 MobiDBLite consensus disorder prediction 341 357 - -
Seca3g03246 832 Gene3D - 2 195 IPR015943 GO:0005515
Seca3g03246 832 MobiDBLite consensus disorder prediction 358 374 - -
Seca3g03246 832 Gene3D - 196 308 IPR015943 GO:0005515
Seca3g03246 832 MobiDBLite consensus disorder prediction 338 386 - -
Seca3g03246 832 Pfam WD domain, G-beta repeat 140 173 IPR001680 GO:0005515
Seca3g03246 832 Pfam WD domain, G-beta repeat 56 89 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03246 Seca-Chr3 58971521 58977283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03246 59 269 U-box Gene Family AT2G33340 23.256 8.75e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03246 K11274 - gmx:100809300 1389.02