Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03231 ATGGAAAGAATTCTTGAACGGTATGAGAGATATTCATACGCGGAGAGGCAGCTTGTTGCAAATGATATTCAGCCACAAAATGAAAATTGGACTCTAGAACACGCAAAGCTCAAAGCAAGATTGGAAGTTCTACAGAGAAACCAAAGGAACTTTATGGGAGAAGAACTTGATGGCCTAAGTATCAAAGAGCTTCAGAATTTGGAACATCAACTTGATTCTGCTCTCAAACACATCAGATCACGAAAGAACCAACTCATGTATGAATCCATTTCAGAGCTTAATAAAAAGGATAAAGCCCTTCAAGAACAAAACAACTTGCTTGCTAAAAAGATAAAAGAGAAAGAGAAGGCACTAGCTCAACAGGCACAAATGGAGCAACAAAATGATGATATGGATCTAGCCTCCTCTATCCTTATAGCTCAACCAATGGAGACCCTAAATATTAGAGGCTCCTCACAAGGCAGAGGTGATGGAGGAGACAATGAAGGAACCTCAACTCAACCTCAAGTTAACGCCCTTCTCCCACCTTGGATGCTTCGTCCAATAAATGAATAA 555 0.4018 MERILERYERYSYAERQLVANDIQPQNENWTLEHAKLKARLEVLQRNQRNFMGEELDGLSIKELQNLEHQLDSALKHIRSRKNQLMYESISELNKKDKALQEQNNLLAKKIKEKEKALAQQAQMEQQNDDMDLASSILIAQPMETLNIRGSSQGRGDGGDNEGTSTQPQVNALLPPWMLRPINE. 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03231 184 MobiDBLite consensus disorder prediction 148 184 - -
Seca3g03231 184 Pfam K-box region 24 111 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca3g03231 184 Coils Coil 27 47 - -
Seca3g03231 184 ProSiteProfiles K-box domain profile. 27 117 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca3g03231 184 Coils Coil 90 128 - -
Seca3g03231 184 MobiDBLite consensus disorder prediction 148 172 - -
Seca3g03231 184 Coils Coil 64 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03231 Seca-Chr3 58222462 58229089 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03231 1 183 MADS-box Gene Family AT5G60910 58.696 2.41e-67 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03231 K09264 - gmx:100816836 259.996