Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03230 ATGGGGAGAGGAAGGGTGCAATTGAAGAGGATCGAGAACAAGATCAATAGGCAAGTGACCTTCTCTAAGAGGAGGTCTGGTTTGCTCAAGAAAGCACATGAGATCTCTGTGCTTTGTGATGCTGAAGTCGCTCTTATAGTTTTCTCCAACAAAGGCAAGCTCTTTGACTTCTCCAGCGATCCCTGGTACGTACAATTCTTTCCTCTTAATTGCTGTGTTTTCTTTCAAATCGTCTTGAATTTATTTCTCTCCTTCTCAATCTCTGCCAATTTCAAGATTGAAATATGCAGACGTCGTTGTAAAATTCTTGAAATCATTTTTAATTTCTCTTTAAATGGATCTCCTTAA 348 0.3908 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSNKGKLFDFSSDPWYVQFFPLNCCVFFQIVLNLFLSFSISANFKIEICRRRCKILEIIFNFSLNGSP. 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03230 115 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca3g03230 115 CDD MADS_MEF2_like 2 59 IPR033896 GO:0000977|GO:0045944
Seca3g03230 115 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca3g03230 115 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 60 - -
Seca3g03230 115 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca3g03230 115 Gene3D - 13 65 IPR036879 GO:0003677|GO:0046983
Seca3g03230 115 FunFam MADS-box transcription factor MADS-MC 13 67 - -
Seca3g03230 115 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Seca3g03230 115 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca3g03230 115 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca3g03230 115 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca3g03230 115 SUPERFAMILY SRF-like 2 62 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03230 Seca-Chr3 58219607 58219954 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03230 1 60 MADS-box Gene Family AT1G26310 86.667 5.32e-32 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca3g03230 SRF-TF 9.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03230 K09264 - gmx:100816836 116.701