Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03228 ATGGAGTCTTGGAGTTATGTTCCTGAAGATAAAGGGTATGTTTCTAATGATGCACTTTCGCCTCCCAACACTCTTGGGAGAAGCAAAGGTTCGTTCTTGGGTTGGGAACTGAAAACCCCATCTAATTTTTCCAATGACATGTTGGCCTTGGGTCAGAATAACATTGAGAATCAAGGTTTTGGGGAATTGGGGTTTCCTGGAATGTTGGGGAAACAATTGTGTGATGATCCAATTGGTACTATTCAGAGCAGAAAGCTGGATAGTGGTGTTGATTGTAGAATTACTAGCTCTGTTGTGGCTGCCCCAAATGCATTTTCTGCAAGAGAGGACTTCAATTCTAAGCTTTCAAACTCTAATGGCTACAATTCACTCATTGATTTGAAGCTGGGTAGATTTGCTGATCATGGGGAAGCTATGGCTCCAACATTTTCCAAGGGTGCCCCTATTCTGTCTTCATCTGAGTCCTCAACACCCCCCAAGAGGGTGAGAGCTTCAGGGGTACATGCTCAGACTGCACACTGCCAAGTCTATGGCTGTAACAAGGATCTGAGTGGTTGCAAAGACTACCACAAGAGACATAAAGTTTGTGAGGTTCACTCCAAGACTTCCAAAGTGATAGTGAATGGCATTGAACAAAGGTTTTGTCAGCAATGTAGTAGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGTAGCTGTCGTAAACGCCTTGCAGGCCATAATGAGCGTCGAAGAAAGCCACAAGTGGGTATTCACTCAGGAAAAGCTGGGAGGTTGCTTCAGCCATATGGTGATAGCAGATTCCCGGGGACTATGCTAACATCAGCATCTTTTATCTGCCAAGAGATACTCCCCAGTGGGGTCCTGTCTTCTGAGAAATATGGAACAAGTGACTGGTGGAGACCTATAAAAGCTGAAGATGGCACTAGTTTCAGGCCTCTTTCTTCTATTCCAATTACCAATGGACATTCTCAGTCAAGATCTCTATTTCCTTCATATAGTGAAAAACAATTTCCCTTTCTTCATGATAATGGTGCTACATCTGCTACTGGAAGCATCTTCTGTGAAAACAATAGTCAATATCCACCTGGCCTCGGGGGTTCCAATTCTGGCTCGCAATCATTATTCCAAGACACCTCCTTAGGAAGCGAGGAGTTCAATGTTTTTGATACAGAATCAACTGTCCAAGGATTTTCGGGGATTTCAGACTCTGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAACTCTTCAAGCCAATCGTCAGGAATTCCCGTGGCTCGCCCTTTGGTTATTCCAAGCAGCCATAGCCATTACAACATGAGCCATGTTTCTGAAAAGATGTTAGGAATAAGTTCACAGGCTTCAAGTGGAGTGTCAGATAGGTTCCCATCTGAATTGAATCCTGCAGATGGAAGTCATCTTAGTCCTATATTGATATCAGACAATAATGAAATTATCAATTTTGAAATGGCAGATGGGATTTTCCAAGGATCAGATTTTGTGAATGTCAAAAATCGTCTTTCCTGTGAAGATGTCCCCACCATTGACTTGCTTCAACTTTCATCACAACTTCAGCGAGTCGAGCATCAGAGGCAATCCTTGCAGGTGAAGCAAGAAAATGATTCTTCCTGCTCTCTCCGGATTACTTAA 1659 0.4334 MESWSYVPEDKGYVSNDALSPPNTLGRSKGSFLGWELKTPSNFSNDMLALGQNNIENQGFGELGFPGMLGKQLCDDPIGTIQSRKLDSGVDCRITSSVVAAPNAFSAREDFNSKLSNSNGYNSLIDLKLGRFADHGEAMAPTFSKGAPILSSSESSTPPKRVRASGVHAQTAHCQVYGCNKDLSGCKDYHKRHKVCEVHSKTSKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQVGIHSGKAGRLLQPYGDSRFPGTMLTSASFICQEILPSGVLSSEKYGTSDWWRPIKAEDGTSFRPLSSIPITNGHSQSRSLFPSYSEKQFPFLHDNGATSATGSIFCENNSQYPPGLGGSNSGSQSLFQDTSLGSEEFNVFDTESTVQGFSGISDSGCALSLLSSQSQNSSSQSSGIPVARPLVIPSSHSHYNMSHVSEKMLGISSQASSGVSDRFPSELNPADGSHLSPILISDNNEIINFEMADGIFQGSDFVNVKNRLSCEDVPTIDLLQLSSQLQRVEHQRQSLQVKQENDSSCSLRIT. 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03228 552 SUPERFAMILY SBT domain 172 252 IPR036893 GO:0003677|GO:0005634
Seca3g03228 552 ProSiteProfiles Zinc finger SBP-type profile. 171 248 IPR004333 GO:0003677
Seca3g03228 552 FunFam Squamosa promoter-binding-like protein 14 165 235 - -
Seca3g03228 552 Pfam SBP domain 174 247 IPR004333 GO:0003677
Seca3g03228 552 Coils Coil 520 540 - -
Seca3g03228 552 Gene3D - 165 235 IPR036893 GO:0003677|GO:0005634
Seca3g03228 552 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 114 538 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03228 Seca-Chr3 58092676 58098266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03228 125 329 SBP-box Gene Family AT1G69170 47.642 7.95e-51 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Seca3g03228 SBP 5.7e-31 No_clan