Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03224 ATGGGGTCTATTTGGTTATCTACCATTGGATCTGTTGTACCTCGTGGTGGCTGTTACTTGGCAGTGTTACTCCTGTTACTGCTTTCTTGCTCCACATTCACTCCTACAGAAGCCTATGATGCTCTTGATCCAACTGGAAATATAACAATCAAATGGGATGTCATTAGCTGGACTCCAGATGGCTATGTTGCTGTTGTTACAATGTACAACTTTCAACAGTATAGACATATTCAGGCCCCAGGATGGACATTAGGGTGGACATGGGCTAAAAAAGAAGTGATTTGGAACATGATGGGAAGCCAAACCACAGAGCAAGGAGATTGTTCAAAGTTCAAAGCAGGCATTCCACATTGTTGTAAGAAGGACCCAACAGTAGTGGATTTATTGCCAGGAACTCCTTACAACCAGCAGATTGCAAATTGTTGCAAAGGTGGAGTCTTAAACTCATGGGGTCAGGACCCAAACAATGCAGTAAGTTCTTTTCAGGTCAGTGTTGGTTCTGCTGGAACAACTAACAAAACAGTCAAACTACCAAGAAATTTTACCCTCAAAGCACCAGGACCTGGTTATACTTGTGGCCCTGCAAAGATTGTGAGACCAACTAAATTTATTACCAATGACAAGAGGAGAACCACCCAAGCCTTGATGACCTGGAATGTTACCTGCACTTATTCTCAATTCCTGGCTCAAAAGACACCAAGTTGTTGTGTTTCCCTCTCATCCTTCTACAATGACACTGTAGTAAACTGCCCAACCTGCACCTGTGGCTGCCAAAACAAAACAGAACCTGGCAGCTGTGTAAACAGTCCAGACTCCCCACATTTAGCTTTAGTTGTATCATCAGCATCAAGCAAAGATATAAATACACCTCTAGTCCAATGTACCAGCCATATGTGTCCTATTCGAGTGCATTGGCATGTTAAGCTCAATTATAAGGAGTACTGGAGGATAAAGATCACAATAACAAATTTCAATTACAGAATGAACTACTCACAATGGAACCTTGTTGTGCAGCACCCCAATTTTGATAATATTACTCAGCTTTTCAGCTTTAAGTACAAGCCACTAACACCCTATGACGGCTTAAATGATACAGCTATGCTGTGGGGTGTCAAATTCTACAATGATTTTCTTTCTACAGCTGGACCCCTTGGTAATGTGCAGTCTGAACTATTATTTAGGAAGGACAAATCAACCTTCACTTTTGATAAGGGATGGGCTTTCCCAAGAAGGATTTATTTCAATGGGGATAACTGTGTTATGCCTCCTCCAGATGCTTATCCTTGGCTGCCAAATGCAAGTCCAAAACTAGTTTTCTCTTTACTAAGTACAGTCATAGCCACTTTAGCTTCTTTGTTGATCTTATTAAATCAATCATAG 1380 0.413 MGSIWLSTIGSVVPRGGCYLAVLLLLLLSCSTFTPTEAYDALDPTGNITIKWDVISWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWNMMGSQTTEQGDCSKFKAGIPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLNSWGQDPNNAVSSFQVSVGSAGTTNKTVKLPRNFTLKAPGPGYTCGPAKIVRPTKFITNDKRRTTQALMTWNVTCTYSQFLAQKTPSCCVSLSSFYNDTVVNCPTCTCGCQNKTEPGSCVNSPDSPHLALVVSSASSKDINTPLVQCTSHMCPIRVHWHVKLNYKEYWRIKITITNFNYRMNYSQWNLVVQHPNFDNITQLFSFKYKPLTPYDGLNDTAMLWGVKFYNDFLSTAGPLGNVQSELLFRKDKSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPWLPNASPKLVFSLLSTVIATLASLLILLNQS. 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03224 459 Pfam COBRA-like protein 62 225 IPR006918 GO:0010215|GO:0016020
Seca3g03224 459 PIRSF COBRA 11 458 IPR006918 GO:0010215|GO:0016020
Seca3g03224 459 PANTHER PROTEIN COBRA 27 446 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03224 Seca-Chr3 58056392 58061570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03224 20 456 COBRA Gene Family AT3G02210 73.288 0.0 697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03224 - - gmx:100815779 862.448