Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03216 ATGTATAATCAAGTGAATCGTGGTACTCATTTGGGACAAGGTTCTATCCCTCCAGTGGGGCTGCCGCCTCCGCCTCCACCGCCGCCTGCATATCAGCAGGCTCCACCTCCGCCGCCTCCTCATTTTCAGCATTTTGTCCCACCACCTAACATGGGTGGACAACCGGCTCCTCATATTTATTTACATGGACCTCCAACCACTTCTTCCTCATTTATGCCAAATGCAGGACCATCTTATGCCATCCCTTCTCAAATGCAGCATGGAAATGGCATGGCACCGCAAATGTTCTCTAACCCCATTGGACAGAATTCACAGCATTCTTCAAATTTAGGGGTCCAGAGCCATCCTATTCCGCCCCCAGTTCCCCCTCCTATTGGCCACTCTCACCAGGAAACATCATGGCCTCCAGGGCCACCACCTAGAGTATTGCCACCTCCTCCCTCTTCTTCCCAGGGACAAATTTTGTATAATCCTCCTTTTCATCCACCACCTTCACAGCCTGGTGACATTCAGAATCTTCAGCGAAGCCATAATACTCCTCCTCCTCCTCCACCACCCCATCGTGGATCGGGTTTCCTTCCTCCTGCTCCGGATGGAGTGTATCTCCATTCGAATGTTGGGAATTACCAAGTGCCTTCCATTACTCCTCCACCGCCACCATTGCCGACCTCACCACCACCGGTTCCACCATCTCCACCACCTCCTGCCCCTCCGATGACTTCTCCATCCTCCCACGCTGCACATTCTGATGATCCTAACTCAACGAAGGTTTCTGGCTTTGAATCAAAGGCTGTGGATTCAGTTGATGGAGTTGTGGCTTCCTGTCCATCTGGTATTGCACCTGTGCACAATTCTGATCCCAATGAGGACAGTGGAAGTTGTAGGGAGGTCACTGTTGCTGACGGAGATGAGCTGTTGTCATCTAGAAGTGTAAATTTGGATCTTCCCCCACCTCCACCACAGCCTAGAGAAGAAAAAACTGTGCAGAAGATTAAAGCTTTGTGTCAGCTTATTGCTGAGAATGGTGCTAATATTGAAGACAAGGTTCGTCAAGATGAATTTCAGAATCCTGAATATGCATTTTTGTTTGGTGGCAACCCAGGAACTGAAGCTGCAATTTCTCACACGTATTTCCTGTGGATGAAAAAGAAATATAATTTGGAACCTAGATGGGATGAAAAGAGAAGTGAATCACAGCTAAGGCCTCTAGCAGGAGACTCTTCAGGGAAACAGTATCACCTGCATGCTGCTTCAACTGTAAGTGCTGATTCTGACATGGAGATGGAAGATGATATCACGCTTTCTCCCAAGGACCAGGGGTCAAAGTATGCAATTGAGACCCTAACTCAGCAGCATGATCGTGGTGATGAGGTTTTCAGCATGAATAAGAAAATACACAAGCTGCAGAGTTCAACAGAAAAAGACCCTGCCAAGGGCATCTTATCCAGTGGACCAGGGCTTTTAGCGGATAATGAGCCCATGAAATCTGCAACATCAGTTACCAATGTTCATTGTCCTGTTAATGACTCACCTGAAGTGGCTGAATTCCCCCTGGCCACTGTTTTGGAGAGATCTTCTGCTCCTCTAGATAATGATTTTATACGAAATGGTACTTCTGATCATAATGAAGTCACTAATTCTAATAGAGATTCTGGGAGAGGTTCTGGGCAACTTATACGGAGTGGCAGCCCAATAAGACTTCTTCAAGATTATGCTTCTGATGACACTTCAGATAATGAAAATGAAAGATGTGCTGTAGATGCTAATGTTTTAACTGTCTCAGCTGGAGCTGACACTGGTGTTTCAGCTGCCCATAAAGATTCCAAGAGTTATCTGGAGACTGATATTGGATCTAATAGTCCTTCCAGTACTCGAAAGGGGCTTGGGCTGCTGTCCAAAACATCACAGAATGATTCAGAAATATCTCCACATTTAGTACAAGAGTCTAAGGGAACCTGTAAAAGATCTGTCTCATGTACTGGTGATGGATGTATTGAGAATAATCTTGAAAATCAGGTGTCTGTTAATTTAGCTTCTTCAATAGAGGCTTTCCAGGGAAAAGAAGGGTTAAGTGGTGCTGGCATTGACAGTGATCATAAGAGTGGTGATGCTGAACAGGAAGATGAGAATGAGAGGAAAACCTCAAAGTTAGAACAAACTGTTCTGAAAGTAGATAAATTTGGAAGGCTTCCCAGAGAAGGTGCTACAGATAGCGACTCTGATGATTCTTGCTATCATCAGACTAGGAGGAAAAACAAAAGAGATAGAAGTTGGAGTCGCAGCCGGTCTCCCCCAGACCGGAGGAGGAGGAGGAGGAGCCCCCGGAGGAGAAAGGATAAAAGAAGCCGGTCTCGCAGCTGGTCTCCTCGGCGCCATAGAAGTAGGAGCAGGTCTCCGATCTTAAGACGTTCAGGTGACTTTCGTGGTGAGAATGTGAGAAAGGACAAGGGTCAGTGCTTTGCTTTCTCTCGTGGAAAGTGCAATCGCGGAGCATCTTGTAGGTACATACATCATGAATCTGACAAGAATGCTACTTCAAGGCGCCATAGGAATAAACATGATCTGGAAGTCTATTCTCTTGAAAAAAAATCTAGGGGTAATGAAGGCATGAAGAATATTTCTTCTAAAATGTCAGAATATGAGCATGATGGAGTCAGGAGTCAGGATGTAGATCTCTGCCAGAATGTAATTGGCCAGGAAGTAGTGCAGAGAAAAGAAGATTTCGGGAGACATGCTGCTGTGTCTGCTACCTTTGGTCTTGATGGTCAACCAGTTAGCAATCCAAGTAAATCTGAAGGTCTCAGTGAGGTTGCCCCTAACGTGCAGGAAAACTTGGTAGTCAGAGAGGAGCCAAAAGCTTTAATCCATGAAAATGATAGTTTTCAGAAAGCAGTGAACTCTCATCAGCAACACTTAGCTGATGGCTTTCACCCTGAAGTTTTAAGCAGTGGTGATGCTTTTAAACCATCTGGTGGTACACCTAAAGATGGCATTCCCTCAGAAGATGGTTCATTTGTTCAGCAAGTACAGTCTAATATTTCTGTTGGAGTTCCAGAACATTCTGGTCACCCATCTCAGCTTTTAAATGTGTCTTTTGTGACTGATTTGTCATCTGATAAAAGATCAATGGTTTCTGCTAGTGCCAATAAGGTTTCTGGAAGTGAACCCTTAACATCAACTCAGCTACAGTCAGCCACTAGTTCCATTGGTCCATGTGTCACATCAGAGCAGCCTTCAATGCATGCTCAGGCTTCCAAAGACTTACCTCCACATATTGGTTCCTCAGTGGAATTCCCGGATCATACTTACCAGTTGCCTACTTCTGTTGTTTCACATTCTCAGGGTGAAAATGCTGTGCATATGCCACAAATTTCAAGGCAATATGATATGATGCAGCAAAATGCATTCTTTCCTTTCCAATCCACTACCAGAGAAAAGTTTGAGCCTTACCCAGCTCCATTACACACACCAAATTCTCACTTCAGTGTACATCCTAATAGCTCTTGGACATCCTTGCCGCCGCCCCCGCCGCCCCCACCATCACAAGCGATGTATAATTCCAGTTCAAACATGGGAGTTGCAAAATCATTTATTTCTTCAGAATTTAATCAGAGTCAATTGCATTCGAGAACTGACTTTGTTTCTCAGACTTCCATGAATCCTGGATTATCAACTCATTCTCAAAGTTCTAAGTTTCATGATCAAGCATATCCTCCAATGCAGGATCATTCACGAACTTTCATGCTTACAGAGCCTTTCTCTCCAAACCATCTCCCTCGGGGGAACCCAGCATGTCAATCGCTTCCAGGCCCTAATCTCAATAGAGAAGACCATTGTAATCAGCTTTCAATGCAGGATACAAAATTTTCAAGCTCCACGTCTTTTAGTGGTCTGCATCCTCAACCAAAGCAATTTTCCTGGGAGTCAGATGTGAACAGATTACAACCTTCTTTGGGTAGCATGTTGCCTCCTGAAGGACATTTCAAGACCTCTTCTCACATTCATCCATTATCACAGAAGCAGCAATCAGTTTATAGTTTTCAATATTCTGCATCTGATGTTAATTTGGGTGTGCCTGGTGAGACTGTAACTGTATCCAGATATCCACCAGATGTTCTCGATAGTAATCATTCAACTTCTCTTCCGAGTTTTGGAGTATCAAGAATTTCTGCTCACTATAATCCTTATGCATCAACCTTTGAGCAGCCACTAAGTTCCAAATTCAGTTCAAGTATTTTTAGACAAGAAAATGACATAATCCATGAAAACACTTGTGGCTCTTCTAGATTGAACCATACTCCTATAAATAGGGAAGGGGATGGCATTGGATCAAGACAGTCAGCATCATTACCAAAACCAGCTAGAGCTGTTGTTGGTCAGATTCTACCTAGGTCTGGTGGTGAACAATATGATCCACTTTTTGACAGTATTGAGCCATCATCCTCTTTGAAGAAATTTGATTTTGATCAGAAGCAGGAAGTTACAGGTGAATCCAACATCAGCCTAAGGCCCAAAAGTTCGTATATGTCTTTGGACATGGAAGAGAAGAAGCTTGAGGAGGTTGGAGCTGTTGCCTCTACCACTTCTCAAACTAATGATGAATATGGTGAGACAGCGGATGCTGAAGTGGGTGCTGTTGAAAATGAGAGCCTAAGTAACCATGTGGATGTTGCAAACATGACTTCAGGGGAGGTTGAGATTAATCAGATCAAGTCCCCAGGGAAAAGAAAAAAGAGCAAGGATTCCAGATCTATGAAATTGTTCAAAGTTTCTATTGCAAACTTTGTAAAGGAGGTTTTGAAACCATCATGGCGACAGGGTAATATGAGTAAGGTGGCTTTCAAAACCATTGTTAAAAAGACTGTAGATAAGGTGTCAGGAGCCATGAAAGGTCACCGTGTACCCAAGTCTCAGGCGAAGATAAGTCAGTACATTGACTCATCACAGCGAAAGCTGACTAAACTTGTGATGGGTTATGTTGACAAGTATGTCAAGGTGTGA 5001 0.4407 MYNQVNRGTHLGQGSIPPVGLPPPPPPPPAYQQAPPPPPPHFQHFVPPPNMGGQPAPHIYLHGPPTTSSSFMPNAGPSYAIPSQMQHGNGMAPQMFSNPIGQNSQHSSNLGVQSHPIPPPVPPPIGHSHQETSWPPGPPPRVLPPPPSSSQGQILYNPPFHPPPSQPGDIQNLQRSHNTPPPPPPPHRGSGFLPPAPDGVYLHSNVGNYQVPSITPPPPPLPTSPPPVPPSPPPPAPPMTSPSSHAAHSDDPNSTKVSGFESKAVDSVDGVVASCPSGIAPVHNSDPNEDSGSCREVTVADGDELLSSRSVNLDLPPPPPQPREEKTVQKIKALCQLIAENGANIEDKVRQDEFQNPEYAFLFGGNPGTEAAISHTYFLWMKKKYNLEPRWDEKRSESQLRPLAGDSSGKQYHLHAASTVSADSDMEMEDDITLSPKDQGSKYAIETLTQQHDRGDEVFSMNKKIHKLQSSTEKDPAKGILSSGPGLLADNEPMKSATSVTNVHCPVNDSPEVAEFPLATVLERSSAPLDNDFIRNGTSDHNEVTNSNRDSGRGSGQLIRSGSPIRLLQDYASDDTSDNENERCAVDANVLTVSAGADTGVSAAHKDSKSYLETDIGSNSPSSTRKGLGLLSKTSQNDSEISPHLVQESKGTCKRSVSCTGDGCIENNLENQVSVNLASSIEAFQGKEGLSGAGIDSDHKSGDAEQEDENERKTSKLEQTVLKVDKFGRLPREGATDSDSDDSCYHQTRRKNKRDRSWSRSRSPPDRRRRRRSPRRRKDKRSRSRSWSPRRHRSRSRSPILRRSGDFRGENVRKDKGQCFAFSRGKCNRGASCRYIHHESDKNATSRRHRNKHDLEVYSLEKKSRGNEGMKNISSKMSEYEHDGVRSQDVDLCQNVIGQEVVQRKEDFGRHAAVSATFGLDGQPVSNPSKSEGLSEVAPNVQENLVVREEPKALIHENDSFQKAVNSHQQHLADGFHPEVLSSGDAFKPSGGTPKDGIPSEDGSFVQQVQSNISVGVPEHSGHPSQLLNVSFVTDLSSDKRSMVSASANKVSGSEPLTSTQLQSATSSIGPCVTSEQPSMHAQASKDLPPHIGSSVEFPDHTYQLPTSVVSHSQGENAVHMPQISRQYDMMQQNAFFPFQSTTREKFEPYPAPLHTPNSHFSVHPNSSWTSLPPPPPPPPSQAMYNSSSNMGVAKSFISSEFNQSQLHSRTDFVSQTSMNPGLSTHSQSSKFHDQAYPPMQDHSRTFMLTEPFSPNHLPRGNPACQSLPGPNLNREDHCNQLSMQDTKFSSSTSFSGLHPQPKQFSWESDVNRLQPSLGSMLPPEGHFKTSSHIHPLSQKQQSVYSFQYSASDVNLGVPGETVTVSRYPPDVLDSNHSTSLPSFGVSRISAHYNPYASTFEQPLSSKFSSSIFRQENDIIHENTCGSSRLNHTPINREGDGIGSRQSASLPKPARAVVGQILPRSGGEQYDPLFDSIEPSSSLKKFDFDQKQEVTGESNISLRPKSSYMSLDMEEKKLEEVGAVASTTSQTNDEYGETADAEVGAVENESLSNHVDVANMTSGEVEINQIKSPGKRKKSKDSRSMKLFKVSIANFVKEVLKPSWRQGNMSKVAFKTIVKKTVDKVSGAMKGHRVPKSQAKISQYIDSSQRKLTKLVMGYVDKYVKV. 1667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03216 1666 MobiDBLite consensus disorder prediction 613 647 - -
Seca3g03216 1666 MobiDBLite consensus disorder prediction 530 565 - -
Seca3g03216 1666 MobiDBLite consensus disorder prediction 1156 1180 - -
Seca3g03216 1666 MobiDBLite consensus disorder prediction 982 1003 - -
Seca3g03216 1666 MobiDBLite consensus disorder prediction 1047 1095 - -
Seca3g03216 1666 SUPERFAMILY Surp module (SWAP domain) 315 385 IPR035967 GO:0003723|GO:0006396
Seca3g03216 1666 MobiDBLite consensus disorder prediction 602 647 - -
Seca3g03216 1666 Pfam Surp module 331 381 IPR000061 GO:0003723|GO:0006396
Seca3g03216 1666 MobiDBLite consensus disorder prediction 1047 1082 - -
Seca3g03216 1666 MobiDBLite consensus disorder prediction 63 114 - -
Seca3g03216 1666 MobiDBLite consensus disorder prediction 17 54 - -
Seca3g03216 1666 MobiDBLite consensus disorder prediction 1254 1275 - -
Seca3g03216 1666 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 391 1665 - -
Seca3g03216 1666 MobiDBLite consensus disorder prediction 689 821 - -
Seca3g03216 1666 MobiDBLite consensus disorder prediction 242 261 - -
Seca3g03216 1666 ProSiteProfiles SURP motif repeat profile. 330 378 IPR000061 GO:0003723|GO:0006396
Seca3g03216 1666 Coils Coil 1663 1666 - -
Seca3g03216 1666 MobiDBLite consensus disorder prediction 133 147 - -
Seca3g03216 1666 MobiDBLite consensus disorder prediction 698 749 - -
Seca3g03216 1666 ProSiteProfiles Zinc finger C3H1-type profile. 813 840 IPR000571 GO:0046872
Seca3g03216 1666 MobiDBLite consensus disorder prediction 750 798 - -
Seca3g03216 1666 MobiDBLite consensus disorder prediction 531 558 - -
Seca3g03216 1666 MobiDBLite consensus disorder prediction 799 820 - -
Seca3g03216 1666 MobiDBLite consensus disorder prediction 1 326 - -
Seca3g03216 1666 Gene3D Surp module 328 386 IPR035967 GO:0003723|GO:0006396
Seca3g03216 1666 MobiDBLite consensus disorder prediction 212 241 - -
Seca3g03216 1666 MobiDBLite consensus disorder prediction 177 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03216 Seca-Chr3 57912877 57921151 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca3g03216 Surp 0.00012 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03216 - - gmx:100807768 1925.6