Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03209 ATGGGGTTGCGGGCAGCAAGTAGAAGCCTGCCTATTCTCCGAAACAGTTTTAGCACTTCATCATCCCCATCTCACTCTCACTACAGGAAACAAATCTCACTCGCTAATCTCTTCCAAAGGCACGGTTTCCCCTCCTCCCACCTTCCCTCCTTTCTCTCCAACAATCGCTTTCTCTTTGATTCCGATTTTTCCGAGCTTCAGAAATCCCTCAACACCCTCTTTTCCTTCCGAATTCCCCAGAAAACCCTCATTTCCCTCATTCTCGAATGCCCCAGCGTGTTGGAACACCCGTTTCTCCAGAACTGGGAATCGCGTTTTTCAGAATTGAAATCCCTGGTTCCCAACCCTTCCCCTTTGATGCTCGCGAACTTGCTGCAATGTTCTCGAAGGTTCAACCTTGACCCGGTTGAGCTTTCCCACAAACTCGAGGTTTTGAAGGGTTTAGGGTTTTCTGGCGCCACCATGGCTAGGGTTTTGGAAGGGTTTCCCAGCGTGCTCATGATGAGTGAGAAGGAAATCGTTAGTGTAGTTGATTTTCTCGTGGAATTTGGGGTCCCCAGGGATGAGGTTGATCGAATTGTTGACTTGTATCCTAGGGTTTTGGGATTTGGGGTGGAAGGTAAGTTGAAACCGTTGATTCAAGAGTTGAGGGGTTTGGGATTTACTCTCCGTGAGGTTAGAAAAGAGATAGTTAGGGAGCCAAGGGTTCTAGGAATGGAAATTGGAGAATTTTCACGGTGTTTGAGGTTGCTGGAGGGTTTGAAATGCAGGGAAGCAATCAAAGAGAGGATTTTTGGAGAGGGTTTGCTGAGGGCTTGTTTTGAAGTGAAACTGAGAGTGGATTGCTTGTGTGGTCATGGTTTGATTCGTAGGGATGCTTTTAAGGTATTGTGGAAGGAACCAAGGTTGATCACTTATGATTTGGAAAGTATTGAGAAGAAGATTGAGTTTTTAGTCCATAGAATGAAGTATAATGTTGATTGTTTGCCTGATGTTCCTGAGTACTTGGGTGTGAATTTTGAAAAGCAGATCGTTCCTAGATACAATGTGATGGAGTATTTGAGAGCAAAAGGTGCAATTGGTTTTGAGGTTGGATTGAAGGATCTGATCAAGCCTACTAGGCTTAAATTTTATAATCTTTATGTCAAGCCCTACCCGGAGTGTGAAAAAATATATGCAAGATTTTTAGGAAATCTTGAAGTTAAAAGCAAGCATCCAGCTGGACTCTGGAAACTCTTTAAACCACAGAAGTTCCCTGAAACTGATGAAGATATGAAGAACATGAAATCTTTCATGGACTCACTGGTGTAG 1311 0.4394 MGLRAASRSLPILRNSFSTSSSPSHSHYRKQISLANLFQRHGFPSSHLPSFLSNNRFLFDSDFSELQKSLNTLFSFRIPQKTLISLILECPSVLEHPFLQNWESRFSELKSLVPNPSPLMLANLLQCSRRFNLDPVELSHKLEVLKGLGFSGATMARVLEGFPSVLMMSEKEIVSVVDFLVEFGVPRDEVDRIVDLYPRVLGFGVEGKLKPLIQELRGLGFTLREVRKEIVREPRVLGMEIGEFSRCLRLLEGLKCREAIKERIFGEGLLRACFEVKLRVDCLCGHGLIRRDAFKVLWKEPRLITYDLESIEKKIEFLVHRMKYNVDCLPDVPEYLGVNFEKQIVPRYNVMEYLRAKGAIGFEVGLKDLIKPTRLKFYNLYVKPYPECEKIYARFLGNLEVKSKHPAGLWKLFKPQKFPETDEDMKNMKSFMDSLV. 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03209 436 Gene3D Transcription termination factor 3, mitochondrial 170 396 IPR038538 -
Seca3g03209 436 FunFam Transcription termination factor MTERF15 mitochondrial 170 392 - -
Seca3g03209 436 Pfam mTERF 133 243 IPR003690 GO:0003690|GO:0006355
Seca3g03209 436 Pfam mTERF 278 371 IPR003690 GO:0003690|GO:0006355
Seca3g03209 436 SMART mt_12 227 257 IPR003690 GO:0003690|GO:0006355
Seca3g03209 436 SMART mt_12 156 186 IPR003690 GO:0003690|GO:0006355
Seca3g03209 436 SMART mt_12 191 222 IPR003690 GO:0003690|GO:0006355
Seca3g03209 436 SMART mt_12 326 360 IPR003690 GO:0003690|GO:0006355
Seca3g03209 436 SMART mt_12 294 325 IPR003690 GO:0003690|GO:0006355
Seca3g03209 436 SMART mt_12 121 151 IPR003690 GO:0003690|GO:0006355
Seca3g03209 436 SMART mt_12 84 115 IPR003690 GO:0003690|GO:0006355
Seca3g03209 436 PANTHER CGI-12 PROTEIN-RELATED 23 385 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03209 Seca-Chr3 57786490 57789232 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca3g03209 mTERF 6.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03209 - - pcin:129319850 599.356