Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03207 ATGATGGCAAGTTCAAGAGAAGGTTATGAAGCTAAGCAAGAAGGTGACACCATTAACATTGCTGACAAATTCTCCAAGATATCCTCTACTTCAAGACAATGGTCAGGGTTCAGAAATCCAAGAATTGTGAGAGTATCACGTTCTTTTGGAGGAAAAGATAGACACAGCAAGGTTTGCACCATAAGAGGATTAAGGGACAGAAGGATTAGGCTCTCTGTACCAACAGCAATTCAGTTATATGATCTTCAAGACAAGCTTGGACTCAGCCAACCAAGCAAGGTGATAGATTGGTTGCTTGAAGCTACTAAATTAGACATTGATAAGCTCCCACCACTTCAATTCCCTCAAGGCTTTTCTCAATTTCATCATCACCATCCACAAACCCTACTTCCTTTCCATGATTCAGGTGCTTCCTCTGAGCTCTCACTTGGACCTTTCTATGATGCTAATTCCACTCTTTTGAGAGATGGGGGAATTCAAAACCTCATGGCAAAGTCAAGGTTTTGGGACATAGACTCATTGTCAAGAGTTAAAGGCAAGGAATTAGCTGAAAGAGGGTACATCACAGATAAAGGAAAGTGGATCAAAACAAATGATGAGCAAGAAAATCAAGAAGGAGTGGTAGTTGGAAATGGAAATTACAACAACTTGCAGAGGCTTTTCCCTATGAGTACTACTCACTCTCCTTTACCTGGTGGTTTGTTAAACAATGCCATGTCATATAACTCCTACCATTCAGAACCTTCTAGTCTGTCTTTATCCCAATTTGGAAGCCATGGATTGTTTCATTCTCAAATAGATCATCCCCATCCAAGCAATGGTGTGCAATTTCCATCTTCTTTGAATGTACCTTCTTCAGCTGGTAATTCCCAATTATTGTTTGGTCCATCTTCTGCTGCTACACCATCATCACTTTTCACTCCTTTTATGACAGAAAATGATCCAAGTCAAAGGCAATTCAATAACCATATCCATCAGTTCCTAAACTCATCATCAGGTTCTTCACAACTCTTGCCTCATCCTCTCATTCCATCTCTTCACTCATTCAATTCAACTGCAATCAGACCCTTTCCATCTCCATTTAGTTCCAAGCTTCTGGACTCAGATAACAACAACCGTAGTAACCAACCAGATAACGGTAGTGATGCTCGTTCTTGA 1158 0.405 MMASSREGYEAKQEGDTINIADKFSKISSTSRQWSGFRNPRIVRVSRSFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLSQPSKVIDWLLEATKLDIDKLPPLQFPQGFSQFHHHHPQTLLPFHDSGASSELSLGPFYDANSTLLRDGGIQNLMAKSRFWDIDSLSRVKGKELAERGYITDKGKWIKTNDEQENQEGVVVGNGNYNNLQRLFPMSTTHSPLPGGLLNNAMSYNSYHSEPSSLSLSQFGSHGLFHSQIDHPHPSNGVQFPSSLNVPSSAGNSQLLFGPSSAATPSSLFTPFMTENDPSQRQFNNHIHQFLNSSSGSSQLLPHPLIPSLHSFNSTAIRPFPSPFSSKLLDSDNNNRSNQPDNGSDARS. 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03207 385 ProSiteProfiles TCP domain profile. 51 109 IPR017887 -
Seca3g03207 385 MobiDBLite consensus disorder prediction 360 385 - -
Seca3g03207 385 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 41 340 IPR005333 GO:0003700
Seca3g03207 385 Pfam TCP family transcription factor 51 118 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03207 Seca-Chr3 57764872 57767160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03207 35 378 TCP Transcription Factor Family AT5G60970 42.817 9.21e-57 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Seca3g03207 TCP 1.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03207 - - gmx:100804574 464.151