Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03195 ATGGCTATGGCTGCTGCTCTGCGACGCGAAGGGAAGCGATTGGCCCCTCTCATCTCTCCTCAACCAATCAATGCTGTTCGATCTTCTCTCATCTCTCCAGACCAAGCCCCCAATGGAATTCGCTCTATTTCAACTCAAGTAGTGAGAAACCGGATGAAGAGTGTGAAGAATATCCAGAAAATTACCAAGGCAATGAAAATGGTTGCTGCATCAAAGCTAAGAGCTGTTCAAAGTAGAGCTGAAAATTCACGTGTTGATGTCAAGAAGAATGTTGTTGTTACCATTTCTTCAGACAAAGGTCTTTGTGGTGGAATCAATTCTACAGCTGTCAAGATAAGCAGGGTTCTGCACAAATTGAATTCTGGGCCTGAAAAAGAGACAAAGTATGTCATATTGGGAGAGAAGGCTAAGGCTCAATTGGTTCGTGACTCAAAGAAAGACATCCTGCTTAGCTTAACTGAGTTGCAGAAAAATCCTCTGAATTATACCCAGGTCAGTATATTGTGTGTCTCTGCCAGTGCGACCTGGTTGATGGTCTTACTCACAGTGTCTGTCTTGGCAGATGACATCCTAAAGAATGTGGAGTTTGATGCATTGAGGATTGTTTTCAACAAATTTCATTCGGTTGTGCAATTTCTGCCAACAGTGTCAACTGTACTCTCTCCTGAGATTGTTGAGAGAGAGGCTGAATCTGGAGGAAGGCTTGGGGAACTGGATTCCTATGAGATTGAAGGTGGCGAGACAAAATCAGAGATTCTTCAGAATCTGGCAGAGTTCCAGTTTTCCTGTGTCATGTTCAATGCGGTGTTGGAGAATGCTTGCAGTGAGCAAGGAGCAAGGATGTCTGCCATGGACAGCTCTAGCAGGAACGCAGGGGAGATGCTTGATCGTCTCACCCTCACCTATAACAGAACTCGTCAAGCATCAATCACCACTGAATTGATTGAGATTATCTCTGGAGCTTCAGCACTGGAAGGTTAA 981 0.4455 MAMAAALRREGKRLAPLISPQPINAVRSSLISPDQAPNGIRSISTQVVRNRMKSVKNIQKITKAMKMVAASKLRAVQSRAENSRVDVKKNVVVTISSDKGLCGGINSTAVKISRVLHKLNSGPEKETKYVILGEKAKAQLVRDSKKDILLSLTELQKNPLNYTQVSILCVSASATWLMVLLTVSVLADDILKNVEFDALRIVFNKFHSVVQFLPTVSTVLSPEIVEREAESGGRLGELDSYEIEGGETKSEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALEG. 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03195 326 PANTHER ATP SYNTHASE GAMMA CHAIN 39 324 IPR000131 GO:0015986|GO:0045261|GO:0046933
Seca3g03195 326 NCBIfam ATP synthase F1 subunit gamma 85 324 IPR000131 GO:0015986|GO:0045261|GO:0046933
Seca3g03195 326 Gene3D - 84 231 - -
Seca3g03195 326 PRINTS ATP synthase gamma subunit signature 271 290 IPR000131 GO:0015986|GO:0045261|GO:0046933
Seca3g03195 326 PRINTS ATP synthase gamma subunit signature 302 323 IPR000131 GO:0015986|GO:0045261|GO:0046933
Seca3g03195 326 PRINTS ATP synthase gamma subunit signature 197 214 IPR000131 GO:0015986|GO:0045261|GO:0046933
Seca3g03195 326 PRINTS ATP synthase gamma subunit signature 87 106 IPR000131 GO:0015986|GO:0045261|GO:0046933
Seca3g03195 326 ProSitePatterns ATP synthase gamma subunit signature. 310 323 IPR023632 -
Seca3g03195 326 Pfam ATP synthase 46 324 IPR000131 GO:0015986|GO:0045261|GO:0046933
Seca3g03195 326 FunFam ATP synthase gamma chain 279 321 - -
Seca3g03195 326 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 45 324 IPR035968 GO:0015986|GO:0045261|GO:0046933
Seca3g03195 326 CDD F1-ATPase_gamma 44 321 IPR000131 GO:0015986|GO:0045261|GO:0046933
Seca3g03195 326 Gene3D ATP synthase, gamma subunit, helix hairpin domain 47 83 - -
Seca3g03195 326 PIRSF ATP_synthase_gamma 11 175 - -
Seca3g03195 326 PIRSF ATP_synthase_gamma 170 324 - -
Seca3g03195 326 Gene3D ATP synthase, gamma subunit, helix hairpin domain 232 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03195 Seca-Chr3 57447779 57452323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03195 13 324 Primary Pumps ATPases AT1G15700 27.005 9.06e-24 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03195 K02136 - gmx:100813657 503.827