Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03191 ATGGGTCGTGGAAGAATACCCATGGAACTCATTCAAAAGGAAAAAGCTCGTAAGACAACATTTCTAAAGAGAAAGAATGGCTTGATGAAGAAAGTTTATGAGTTTTCCACTCTTTGTGGAGTTGATGTTTGTGTAATTATTTATGGCCCCAACTTTGATAACCAACAACTAGTTGAACCTGAAACATGGCCTGAAGACAGAAGAGAGGTATACCGCATAATTCAAAAATATTATGACACCACTAGTGATAGACGTCCAAAGATCTATAGTGTGCAAGAGTATTATCAAGATAGAATGAAGAAGATTGAAGGTGAGATTTCAAAAATATGCAAAGACAAGCTCAAAATAATGTACCCAACTTGGGATGATTCTTTCAATCCTCTTGGAGAGGAGCAACTAAGGATTTTTGTTAGCTTATTGGATTCTAAGCTTGATGCTTGTAGTCAAAGGATGAATGTGTTAAAAGGGGATCACAAGGGAAAAGCAATAGCTGAATCAGATAATATGATTATGACACTTAGTCCCTACTTAGCCTCAAATCCAAGTAGCTACCTCAATCTCATGCAGAACATTGCTCAAGCACAATTTTTCCCTCCCCTTTCTCAACCTTCCATGCTTCATTTTGACCAAAATTATATGCAATTGATGGGGAAAAATGGAATGGTGATGGATTGGGCTGATCAAGTTGGTAATGACAACAAAAATGGTATGCTAAAGGAGGATGGAGATGAAAATAATCAAAAATTGTCACCAAACTATTATTACAATGGGAATACACAGACAATGCAGCCATGTAGTATTGATCTGCAGACTCTTCCTTCTCAGAACTCACAGTATGAAGTTGCTCTTACAGATCCACCACCCGGATTTCAACTTAATGGACTCTATGGCACAAATATGGTACAATCTCAAATGTTCAACTACATGCAAGGAAGAGAGTAG 942 0.3747 MGRGRIPMELIQKEKARKTTFLKRKNGLMKKVYEFSTLCGVDVCVIIYGPNFDNQQLVEPETWPEDRREVYRIIQKYYDTTSDRRPKIYSVQEYYQDRMKKIEGEISKICKDKLKIMYPTWDDSFNPLGEEQLRIFVSLLDSKLDACSQRMNVLKGDHKGKAIAESDNMIMTLSPYLASNPSSYLNLMQNIAQAQFFPPLSQPSMLHFDQNYMQLMGKNGMVMDWADQVGNDNKNGMLKEDGDENNQKLSPNYYYNGNTQTMQPCSIDLQTLPSQNSQYEVALTDPPPGFQLNGLYGTNMVQSQMFNYMQGRE. 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03191 313 CDD MADS_SRF_like 2 78 IPR033897 GO:0000981|GO:0000987|GO:0045944
Seca3g03191 313 Gene3D - 13 103 IPR036879 GO:0003677|GO:0046983
Seca3g03191 313 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Seca3g03191 313 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca3g03191 313 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Seca3g03191 313 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca3g03191 313 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 189 - -
Seca3g03191 313 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca3g03191 313 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca3g03191 313 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03191 Seca-Chr3 57369459 57370400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03191 1 150 Type I MADS-box Gene Family AT5G55690 40.397 4.41e-29 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca3g03191 SRF-TF 5.3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03191 - - ccaj:109800518 353.214