Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03159 ATGGAAGAAGATCAAGAACTCAAACACGTGTGCAAGTTCTGCAGCAAGAGCTTCCCTTGTGGTAGATCCTTAGGGGGTCACATGAGGTCTCATGTCACTACCATCACCAATGGTTCAACAGAAACAGGTGGAGACAACACAGGAATGGGTTCTGAAGGAGGAACTAATGCTGGGTATGGTCTGAGAGAGAATCCCAAGAAGACTTGGAGACTCACAGATTCAAGTGAAGACAACAATTTGGTGTTGGACAAGTTCTGCAAAGAGTGTGGAAAAGGGTTTCACTCTTGGAAAGCTCTGTTTGGTCACATGAAGTGTCACTCTGAGAAAGAAAGAGTGTCTAATAATAACAGCTTGGATGATCAAGATTCATGGACTAACAATGCTAGCCAATCTGATACTGAAGCTACTGTTCCAAATCGAAGGAGAAGATCCAAGAGAAGAAGAACAAGGTACATGACCACCCCAGTAACTTCTTCTATGTCTTTTGTTGCTGCCAATCCTTCTTCCTCTGTTTCTGAGGCAGAGCAAGAGCTAGAGCAAGAAGAGGTTGCTATGAGCTTGATTATGCTTAGCAGAGATATGAGTCCTTGGGGTGGTCTCAATTCTTTTGCTGCTGAATCCTCTGACAACAACTCATTGCAATTGGAAGCTCCATCTAAGATTGAAATGGTAAAAGTGGCCAAACCAAGGGACAATAAATTGGAGTTTGGCAATTCAGTTTCCCCAAATCTCAATTCTAAAGGGAAAAGTTCAGAACTTTTGGCTAATGAGAGTCCTGGAAATGGATTCAGGATGCAGAAAAACAGAGTTTTCATCAAGAATGGGAAGCTTGAGATTGATTCTGAGTCAGCAGCATTTGAGGTCAATGAAACAGAATCAGTTCTATCAAAGTCAGATATTAATAATAATAAGTACACTTCAATCAAGGCAAAGTTTTTGGATTCTGAAACCAAGTCAAGTTCTTTGAAGAACAAGAACTCTCATAAGAGAGGCAAGTTTGAGTGTACTACATGCAACAAAATCTTCCACTCCTACCAAGCTCTTGGAGGTCATAGAGCTAGTCATAAGAAGATCAAAGGTTGCTTTGCTTCAAGGAATGAAAGCAGTGAGAACAGCATTGAATTGGAACCAGACCTCTCCCCTGACCCAACAACAATAGAAAGTAATAAGCTCATGAAGAACACTGACAACAATGAGTATATGGAGGAAGACCATGAACTAGGTACTGGTTTTGATGATGGGGTAGACACAGCTAGAGAGTCCAAAAAGAGTAGCAAAGGGCATGAGTGCCCAATTTGCCTCAAGGTTTTTCCATCTGGGCAAGCCTTAGGTGGTCACAAGAGATCTCATTTGGCTAGTGAATCTGAGAGTAGACACTGTCAAAGTCAAACAGTGGTGCTTCAGGAAGCAGTTCCAGAAATAAGGAACTTCCTTGATCTTAATCTTCCAGCTGATACAGAGGAAGAAAGCAATAGTCATGCTGAGCCTTACAGACCTTGGTGGGTAGTAGGAAGCAACCACAAGCAAGGGGCACTGGTAGGCCTCATGTCAAACTGA 1557 0.4232 MEEDQELKHVCKFCSKSFPCGRSLGGHMRSHVTTITNGSTETGGDNTGMGSEGGTNAGYGLRENPKKTWRLTDSSEDNNLVLDKFCKECGKGFHSWKALFGHMKCHSEKERVSNNNSLDDQDSWTNNASQSDTEATVPNRRRRSKRRRTRYMTTPVTSSMSFVAANPSSSVSEAEQELEQEEVAMSLIMLSRDMSPWGGLNSFAAESSDNNSLQLEAPSKIEMVKVAKPRDNKLEFGNSVSPNLNSKGKSSELLANESPGNGFRMQKNRVFIKNGKLEIDSESAAFEVNETESVLSKSDINNNKYTSIKAKFLDSETKSSSLKNKNSHKRGKFECTTCNKIFHSYQALGGHRASHKKIKGCFASRNESSENSIELEPDLSPDPTTIESNKLMKNTDNNEYMEEDHELGTGFDDGVDTARESKKSSKGHECPICLKVFPSGQALGGHKRSHLASESESRHCQSQTVVLQEAVPEIRNFLDLNLPADTEEESNSHAEPYRPWWVVGSNHKQGALVGLMSN. 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03159 518 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Seca3g03159 518 SUPERFAMILY beta-beta-alpha zinc fingers 6 33 IPR036236 -
Seca3g03159 518 Pfam C2H2-type zinc finger 86 108 - -
Seca3g03159 518 Pfam C2H2-type zinc finger 428 452 - -
Seca3g03159 518 Pfam C2H2-type zinc finger 333 357 - -
Seca3g03159 518 Pfam C2H2-type zinc finger 9 31 - -
Seca3g03159 518 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 501 - -
Seca3g03159 518 MobiDBLite consensus disorder prediction 117 135 - -
Seca3g03159 518 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 111 IPR013087 -
Seca3g03159 518 SUPERFAMILY beta-beta-alpha zinc fingers 85 355 IPR036236 -
Seca3g03159 518 ProSiteProfiles Zinc finger C2H2 type domain profile. 333 360 IPR013087 -
Seca3g03159 518 MobiDBLite consensus disorder prediction 113 149 - -
Seca3g03159 518 Gene3D Classic Zinc Finger 1 111 - -
Seca3g03159 518 ProSiteProfiles Zinc finger C2H2 type domain profile. 428 455 IPR013087 -
Seca3g03159 518 SMART c2h2final6 428 450 IPR013087 -
Seca3g03159 518 SMART c2h2final6 9 31 IPR013087 -
Seca3g03159 518 SMART c2h2final6 333 355 IPR013087 -
Seca3g03159 518 SMART c2h2final6 84 106 IPR013087 -
Seca3g03159 518 ProSiteProfiles Zinc finger C2H2 type domain profile. 9 31 IPR013087 -
Seca3g03159 518 ProSitePatterns Zinc finger C2H2 type domain signature. 430 450 IPR013087 -
Seca3g03159 518 Gene3D Classic Zinc Finger 330 450 - -
Seca3g03159 518 ProSitePatterns Zinc finger C2H2 type domain signature. 335 355 IPR013087 -
Seca3g03159 518 MobiDBLite consensus disorder prediction 35 53 - -
Seca3g03159 518 ProSitePatterns Zinc finger C2H2 type domain signature. 11 31 IPR013087 -
Seca3g03159 518 MobiDBLite consensus disorder prediction 35 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03159 Seca-Chr3 56791975 56793573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03159 1 219 C2H2 Transcription Factor Family AT1G26610 45.217 5.79e-45 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca3g03159 zf-C2H2_6 2.7e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03159 - - aprc:113852386 637.491