Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03158 ATGTACCCACAGCAACCGCAACAGCACCAGTACCAGCATCATGTTCCCTTCACCAACTTGCAGCAACCGTTCTATCCCTCAAACCCATTCTTGTTACCTTTCCCTCTCACCTCAGATTCTCCTCTTCATCCTCCAGGCACTGACCCACCTCCAAATTCAACCCCTTCTTCTGTTGCTGCTTACGCTGCCCAAACAACTGATTCTCACAACTGGATCGTCAATCAACCTGAGCTCATCAGATATGATCTTACTGCTGGTTCATCACATGAGACTTCAGCAGTGTCCACAAGTTTTCCTTCTGCGTGGAATGGCACATTGTCACATCAAATTTTCACTAATGATACTACAGCTATGTTGCCTAACAAAACCAAAGTCACAATACCAATGAGATGTGAAGTTTGTAAGATTGATTGCAATAGCAAAGATGTTTATGAAAAGCACATATTGGGAAAGAAACACAAGAAAAATTTGCAGGTACAGACTAATCCCACCACTACATTATTACCAGGACCCTCTCATTCAAATGTACTGGGTCAGACGACTAGTATCCAAGGACAAGCGTTAATCGGTGCTGTAGGCAATGGGGTAGAGTCTAAGAAGCAGAAGGTTTTGAATGGCGGTGCACCCAATGACTCTGCAAAGGTTTGCACGGTATGCAACATTGTGTGCAATAGTCAAGACGTATATAACAATCATCTAGCTGGGAAAAGGCATGCTGCACAGGTTGGCTTGATGTCTAATAATGGAATCGGTCCACATATTGCTGAATTTAAGCGCCATGGTATTGGACCTTGGAAAAAAGCTCCAAAGAAAATAAAGGTGGCTCAATCTGCATGGTGTGAAGTTTGTAAGATCAATTGTAACAGCAGGGATGTGTATATTACACACTTAGCTGGGAAGAAACACCTCAAGAACTTGGAGAAACTGTCAAAACCGAAAATTGATGCCGGTTCCAATGCCACTGCAGCAAATCCAATGATCGGGCCACAGGAAAAGCCAGGTACTGATAAACCAAAACCACAGAAGGCACCAGAAATGGATATTGAGGCAAAGAAACTTAAAGTTGTAGAAGGAGGTGCTGCTACAGATGCTGTTAAAATGTGCAGTCTATGCAATGTGGTCTGCAACAGCCAAACGGTTTTCAATGATCACCTTGCTGGGCATAAACATGCTGCTATGGTGAAAAAGCAGGCAGGGTCAAGCACTGCCATTTAA 1215 0.4354 MYPQQPQQHQYQHHVPFTNLQQPFYPSNPFLLPFPLTSDSPLHPPGTDPPPNSTPSSVAAYAAQTTDSHNWIVNQPELIRYDLTAGSSHETSAVSTSFPSAWNGTLSHQIFTNDTTAMLPNKTKVTIPMRCEVCKIDCNSKDVYEKHILGKKHKKNLQVQTNPTTTLLPGPSHSNVLGQTTSIQGQALIGAVGNGVESKKQKVLNGGAPNDSAKVCTVCNIVCNSQDVYNNHLAGKRHAAQVGLMSNNGIGPHIAEFKRHGIGPWKKAPKKIKVAQSAWCEVCKINCNSRDVYITHLAGKKHLKNLEKLSKPKIDAGSNATAANPMIGPQEKPGTDKPKPQKAPEMDIEAKKLKVVEGGAATDAVKMCSLCNVVCNSQTVFNDHLAGHKHAAMVKKQAGSSTAI. 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03158 404 Pfam Zinc-finger of C2H2 type 131 153 - -
Seca3g03158 404 Pfam Zinc-finger of C2H2 type 368 390 - -
Seca3g03158 404 Pfam Zinc-finger of C2H2 type 215 238 - -
Seca3g03158 404 Pfam Zinc-finger of C2H2 type 279 302 - -
Seca3g03158 404 SUPERFAMILY beta-beta-alpha zinc fingers 276 309 IPR036236 -
Seca3g03158 404 SUPERFAMILY beta-beta-alpha zinc fingers 362 397 IPR036236 -
Seca3g03158 404 SUPERFAMILY beta-beta-alpha zinc fingers 212 242 IPR036236 -
Seca3g03158 404 Gene3D Classic Zinc Finger 266 309 - -
Seca3g03158 404 Gene3D Classic Zinc Finger 113 160 - -
Seca3g03158 404 Gene3D Classic Zinc Finger 195 244 - -
Seca3g03158 404 Gene3D Classic Zinc Finger 344 398 - -
Seca3g03158 404 SMART ZnF_U1_5 275 309 IPR003604 GO:0003676|GO:0008270
Seca3g03158 404 SMART ZnF_U1_5 363 397 IPR003604 GO:0003676|GO:0008270
Seca3g03158 404 SMART ZnF_U1_5 211 245 IPR003604 GO:0003676|GO:0008270
Seca3g03158 404 SMART ZnF_U1_5 126 160 IPR003604 GO:0003676|GO:0008270
Seca3g03158 404 PANTHER ZINC FINGER PROTEIN 385B-LIKE 130 244 - -
Seca3g03158 404 MobiDBLite consensus disorder prediction 35 59 - -
Seca3g03158 404 MobiDBLite consensus disorder prediction 315 343 - -
Seca3g03158 404 SMART c2h2final6 129 153 IPR013087 -
Seca3g03158 404 SMART c2h2final6 214 238 IPR013087 -
Seca3g03158 404 SMART c2h2final6 278 302 IPR013087 -
Seca3g03158 404 SMART c2h2final6 366 388 IPR013087 -
Seca3g03158 404 SUPERFAMILY beta-beta-alpha zinc fingers 114 159 IPR036236 -
Seca3g03158 404 MobiDBLite consensus disorder prediction 38 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03158 Seca-Chr3 56775382 56781701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03158 205 394 C2H2 Transcription Factor Family AT5G61190 32.632 7.11e-22 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03158 - - aprc:113848135 577.4