Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03151 ATGGAAATAACGGAAGAACAGAGAAAACGAGCCGAAGCGAACCGTGCAGCAGCCATCGCAAAACGGAAAGCCTTATTGGAATCCACCGCCGCTCAGCAGCAACAACAACCTCAAGGACACCCCTGGCACCTTTTCAAGTGCCAAAAGATCACCCACCCTCCCAAACCCCAACCCCAACACCACAAGTTCCTCGCCAGGCTCGAAATTTGCTCCCCCGATTCCTTCTCCGTCACCCCTCTCCCCCTTCCCGAATTCCCCTTCCCCGCCCCACACATTTGCTTCGACATTCTCAATTCCATTCTCTCCCACGTGGTTCCCTCGCACTTCACGCAGACCAGCGGGGGCGGGAATGCCTGCGTGTTCAAGCTTTCGGACTACAACGCCGTCCTCAAGCGGTTGAAGGCCGCGACGGATATACAGGTGGAGGAGATTCCTTGGGGGACGTTCAATGTGGTCGAGAGGCTCTCCCATTCCTTCGCGGCGGGGCGGTGGGCGCCGTTGAGGCCTGAGCACTTGAGTGATGAGGAGGTTGACCGCTTGATCGGGAAGCTTCCAAGGACTCTCCTTGATAGGTTGCTCCCTTTCCAAATGGATGGCTTACGGTTTTCCCTCAGAAGGGGTGGCCGCTGCCTCATTGCTGATGACATGGGCCTTGGAAAAACACTACAGGCTATTGCTATTGCGGGATGTTTCTTGGATGAAGGGTCTATACTTGTTGTTTGCCCTGCTGTTTTGCGGTTTTCATGGGCGGAAGAATTGGAGCGTTGGCTTCCTTTCTGCTTGCCTGCTGATATCCATCTAGTTTTTGGCCATCAAGATAATCCGGTATATTTAACAAGATTCCCTAAAGTAGTGGTTATTTCTTATACCATGCTCCATCGTCTTAGGAAGAGCATGCTTGAGCGTGAGTGGGCTCTTCTGATTGTTGATGAATCTCATCATGTGCGATGTACAAAGAAAGCCTCGGAACCAGGAGAGATAAAGGCTGTTCTTGACGTGGCTTCAAAAGTCGGGCGTATAATTTTGCTATCAGGGACACCTTCTTTGTCAAGACCGTATGACATATTTCATCAGATAAATATGTTGTGGCCGGGTTTGCTGGGGAAGACTAAATACGAGTTTGCAAAAACTTATTGTGATTTGAAATATATTAAGGGCATCCAAGGAAAATATTTTGCGGATTATTCAAAGGGCATTCGCTTGGAGGAGTTGAATGTGTTACTGAAGCAAACTGTTATGATAAGGCGTCTGAAAGAGCATGTGTTGCAACAGTTACCTCCAAAACGCCGGCAAATTATAAGACTGTTGTTGAAGAGATCAGATATAGTTGCTGCAAAAAACGCAGTTGCGGTATTGAAGATTGATGCCTCTGAAAATGCAAATGAAGATATGCCTTTGGAAAATTTGGATGAACATGATGGAAAGCTTTCTTATCAGGAACTTGGTATTGCAAAGCTTTCTGGGTTTTGCGAATGGCTTTCCCTCCACCCACTCATTGCAGGATCAGAGAATGCTTCAAAGATGATAATTTTTGGTCATCACCACAAAGTTCTTGATGGAGTACAGGAGTTTATATGTGAGAAAGGAATAAATTTTGTGCGGATTGATGGAAATACTCTTCCAAGAGATAGACAATCAGCCGTAGTCTCATTTCGATCAACACCAGAGGTTAAAATTGCGATAATAGGTATTATGGCAGCAGGTTTTGGACTTGATTTCTCGACAGCACAAGATGTTGTATTCTTGGAGCTACCTCAGTGCCCAACTGTGATGCTTCAGGCTGAGGATAGAGCTCATCGACGGGGGCAAACAAATGCAGTTAATGTATACATATTCTGTGCAAAGGATACCTTGGATGAATCCCATTGGAAAAATTTGAACAAAAGTTTGCACCGTGTTTCATGTACAACAGATGGCAAATATGATTCAATGAAAGAGATAGAGGTTGAAGGTGTTTCTTATTTAGACGCATCATTGGAAACTGACAGTTATGAAGAGCAATCTGCATGTAAAGATGCATCAAGGGGAACACAATTGGATAAGCAATCTTCTGCAGTAAATTCAAATGAATTAGAAGCAAATCAAAATGATAAATTTGATGAGTGGACTTCTTTTGTACATAACACAATTCAGGGTGCTAATGTTATGATGGATAAGGTTGACTGCCTAGATTCAGGCAAGGCTTCAGTTTTGGATGGAAATCTTGATGTAGATGCTTTTGATGCTGAGGAGATATGTTCCGGAAAGAGCTTTGAAGACAAAGATAAAGTAATAGAGGATAAGAAATCAATTTCAACAACAGATGCAGATGACAACCAGCCTGTTCATGCAGTTGAAGCTGATGGACATTGCTCTAATCAAGTTGATTCTCTTAGATTTGAGGAAAAGAAATCATTTTCAACAACAGATGCAGATGAAAACCAGCCTGTTCATCCAGTTGAAGCTGATGGTCATTGCTCTAAATCTAATCAAGTTGATTCTCTTAGATTTGAGGTGAGCCCATACACTGGAAGGATCCACTTGTATACTTGCATTTTGGGTACAGATACAAGACCACAGCCACTTTATGAAAATTTCCGACCAGAAGAACTTGAGTTGCTAAGTTCTGCTGCTGCTGATGAGAAACAGAATATAGAGTCTGTGTCTGTCAAGGATAACCCTGCTTATAGGCATGCTCTTCTGAACTTTTCAAATGAGTGGAAGAATTTGAGGTCAATTGAACGCAAGAAGTTACTTGGAAAACCATTACAACTTCCTTTGGCTGTTGAACTGTGCTACTTGAGTGAAAGCAATAACCACAACAACAAGGGATTATTAAATGGTGGAAGTAAACGACGCATGACACCTTTAGTGGAGATTAGCTATCCATTACCATCCGATGCTGTTTGGAGAAAGGTTTATCTCCGAAGTGGCCTCGGTAAGAAGGAAAAAGAATACACTCAAGGCTGGAGCCTGAAAGATGAGCCTCTTTGTAAGCTTTGTCAAAAGCAGTGCCTGGGTAACAATGCCAAGACACCTGAATATTTTGAAGATCTATTTTGTAACCTTGTATGCTATGAAGAGTATCGCATGAGAACTAGCAACAGATTTCTCCGTCAGGAACTTTTCCAAATTGAACAAGGTGTGTGCACAAATTGCCAATTGGACTGTCATAAGCTTGTTGAGCATATAAGACCTTTGTCATTGGAAAGACGACGGGAGTATGTTGAGAAAGTAGCACCAAAAATTGCAAAGCGGAAGAACATGCTTGAGAGACTTGTCAACGATCCAACTGAAGGCAATTCATGGCATGCTGATCATATTGTTCCAGTATATCAAGGCGGAGGTGAGTGCAAACTGGAGAACATGAGAACTCTTTGTGTGGCTTGCCATTATGATGTCACTGCTGCACAGTGTGCTGAACGACGCACAATAAGAGCAAATGCCAGGAAACAACTAAAAGCGTTAATGAATAGCATGAAAAATGGTTTGAAGGGTGCTGCTGGCACTACTATTAAGGACCATGGGCTTCCCGAGGTACAAGGGAGTTTGATTGAGGATGAGCTTTTAGTCAAGGTTCCTGGAAGTGCATATTCTCTAGCTAACAACTAA 3591 0.435 MEITEEQRKRAEANRAAAIAKRKALLESTAAQQQQQPQGHPWHLFKCQKITHPPKPQPQHHKFLARLEICSPDSFSVTPLPLPEFPFPAPHICFDILNSILSHVVPSHFTQTSGGGNACVFKLSDYNAVLKRLKAATDIQVEEIPWGTFNVVERLSHSFAAGRWAPLRPEHLSDEEVDRLIGKLPRTLLDRLLPFQMDGLRFSLRRGGRCLIADDMGLGKTLQAIAIAGCFLDEGSILVVCPAVLRFSWAEELERWLPFCLPADIHLVFGHQDNPVYLTRFPKVVVISYTMLHRLRKSMLEREWALLIVDESHHVRCTKKASEPGEIKAVLDVASKVGRIILLSGTPSLSRPYDIFHQINMLWPGLLGKTKYEFAKTYCDLKYIKGIQGKYFADYSKGIRLEELNVLLKQTVMIRRLKEHVLQQLPPKRRQIIRLLLKRSDIVAAKNAVAVLKIDASENANEDMPLENLDEHDGKLSYQELGIAKLSGFCEWLSLHPLIAGSENASKMIIFGHHHKVLDGVQEFICEKGINFVRIDGNTLPRDRQSAVVSFRSTPEVKIAIIGIMAAGFGLDFSTAQDVVFLELPQCPTVMLQAEDRAHRRGQTNAVNVYIFCAKDTLDESHWKNLNKSLHRVSCTTDGKYDSMKEIEVEGVSYLDASLETDSYEEQSACKDASRGTQLDKQSSAVNSNELEANQNDKFDEWTSFVHNTIQGANVMMDKVDCLDSGKASVLDGNLDVDAFDAEEICSGKSFEDKDKVIEDKKSISTTDADDNQPVHAVEADGHCSNQVDSLRFEEKKSFSTTDADENQPVHPVEADGHCSKSNQVDSLRFEVSPYTGRIHLYTCILGTDTRPQPLYENFRPEELELLSSAAADEKQNIESVSVKDNPAYRHALLNFSNEWKNLRSIERKKLLGKPLQLPLAVELCYLSESNNHNNKGLLNGGSKRRMTPLVEISYPLPSDAVWRKVYLRSGLGKKEKEYTQGWSLKDEPLCKLCQKQCLGNNAKTPEYFEDLFCNLVCYEEYRMRTSNRFLRQELFQIEQGVCTNCQLDCHKLVEHIRPLSLERRREYVEKVAPKIAKRKNMLERLVNDPTEGNSWHADHIVPVYQGGGECKLENMRTLCVACHYDVTAAQCAERRTIRANARKQLKALMNSMKNGLKGAAGTTIKDHGLPEVQGSLIEDELLVKVPGSAYSLANN. 1197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03151 1196 Pfam SNF2-related domain 210 446 IPR000330 GO:0005524|GO:0140658
Seca3g03151 1196 Pfam Helicase conserved C-terminal domain 500 602 IPR001650 -
Seca3g03151 1196 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 201 365 IPR014001 -
Seca3g03151 1196 SMART HNH_5 1077 1125 IPR003615 -
Seca3g03151 1196 CDD HNHc 1088 1128 IPR003615 -
Seca3g03151 1196 MobiDBLite consensus disorder prediction 798 819 - -
Seca3g03151 1196 Pfam HNH endonuclease 1094 1125 IPR002711 GO:0003676|GO:0004519|GO:0008270
Seca3g03151 1196 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 494 648 IPR001650 -
Seca3g03151 1196 SMART helicmild6 519 602 IPR001650 -
Seca3g03151 1196 SMART ultradead3 188 384 IPR014001 -
Seca3g03151 1196 Gene3D - 170 409 IPR038718 -
Seca3g03151 1196 Gene3D - 1019 1154 - -
Seca3g03151 1196 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 302 653 IPR027417 -
Seca3g03151 1196 Coils Coil 1 23 - -
Seca3g03151 1196 CDD SF2_C_SNF 503 613 - -
Seca3g03151 1196 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 5 1145 - -
Seca3g03151 1196 FunFam SNF2 DNA repair protein, putative 166 415 - -
Seca3g03151 1196 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 416 IPR027417 -
Seca3g03151 1196 Gene3D - 410 697 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03151 Seca-Chr3 56657333 56683067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03151 507 620 RAD5 or RAD16-like Gene Family AT1G11100 38.596 3.24e-15 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca3g03151 SNF2_N 1e-22 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03151 K25861 - gmx:100788690 1820.44