Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03149 ATGGAAGACCATGCCCCTACAAGTATAAGCTCCATTGCTGCATCCTCCGGTGAGCAACACACGGTTCCAACGTTGTCAAGGAAGAGAGCATGGTCAAATTCCGGTTACAGTGTTAGAAGAAATAATGTTTGTGACGACACAAACATGGTAGAAGAATGTGGCCTCCCAAGTGGTTGTGCTAGTGCTGGTAAGGACAATGATACAACCATGATGACATGGACTTCTCTTGAATCTGGTAGAAGCTTCAAGAATATTAAAACTCTTGAAGAACATTCCGCTTGTCGATGTGAATCGGATATCCGAGAAAATCAAGATGACTACAGAGATAGCAAAGCAGAAACTGCAGGGCAAACCAATTCAAAAAGACGAAATAGAACTGCTGCTACCCATAATCAGTCTGAGCGGAAAAGAAGAGATAGAATTAATCAGAAGATGAAAGCCTTGCAGAAGTTGGTGCCTAATGCAAGTAAGACAGATAAAGCTTCAATGTTGGATGAGGTAATTAACTACTTAAAACAGCTTCAAGCACAGATCCAAATGATGAATATGACAAGCATGCCACAGATGATGGTGCCTTTAGCTATGCAACAACAACTTCAAATGTCTATGTTAGCCAGAATGAGTGGTGGTCTTGGCATGGGAATGGTTAACATGGCAGCACAAACAGGTGCTCCAAGGTCATTCCCACAACTCATTCAATCAACAACAGTTGGAGCTGTCACTGCCCCAATATTTGTTCCCCCAACTTTTATGATGCCTTCTTTGGTTCAAGCACGTGCCCCTGCATCTCCAAAGCCTGAACCTGCATCTTCAGGCACTAATCCATACAGCACTAGTCTCACACAATCAGTGAATATGGATATCCTCAACAGCATGGCAGCACTTTATCGGCAACAGATGAGTCAGAACAATCACGCATTGAGCAGCAACAAAGTCCCAAATACGCCATGA 951 0.4322 MEDHAPTSISSIAASSGEQHTVPTLSRKRAWSNSGYSVRRNNVCDDTNMVEECGLPSGCASAGKDNDTTMMTWTSLESGRSFKNIKTLEEHSACRCESDIRENQDDYRDSKAETAGQTNSKRRNRTAATHNQSERKRRDRINQKMKALQKLVPNASKTDKASMLDEVINYLKQLQAQIQMMNMTSMPQMMVPLAMQQQLQMSMLARMSGGLGMGMVNMAAQTGAPRSFPQLIQSTTVGAVTAPIFVPPTFMMPSLVQARAPASPKPEPASSGTNPYSTSLTQSVNMDILNSMAALYRQQMSQNNHALSSNKVPNTP. 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03149 316 MobiDBLite consensus disorder prediction 100 118 - -
Seca3g03149 316 CDD bHLH_AtPIF_like 125 187 IPR047265 -
Seca3g03149 316 MobiDBLite consensus disorder prediction 8 31 - -
Seca3g03149 316 Gene3D - 119 185 IPR036638 GO:0046983
Seca3g03149 316 Pfam Helix-loop-helix DNA-binding domain 128 175 IPR011598 GO:0046983
Seca3g03149 316 SMART finulus 131 180 IPR011598 GO:0046983
Seca3g03149 316 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 125 174 IPR011598 GO:0046983
Seca3g03149 316 Coils Coil 131 151 - -
Seca3g03149 316 MobiDBLite consensus disorder prediction 1 31 - -
Seca3g03149 316 MobiDBLite consensus disorder prediction 100 139 - -
Seca3g03149 316 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 61 305 IPR031066 -
Seca3g03149 316 MobiDBLite consensus disorder prediction 257 279 - -
Seca3g03149 316 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 122 185 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03149 Seca-Chr3 56629128 56635022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03149 87 187 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 59.804 1.89e-29 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca3g03149 HLH 3.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03149 - - gmx:102667566 332.028