Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03145 ATGTCTTTTAACCATTATCCTTCCCTTATGGACTACTGGACTTATCTATTGGGGATAGAAAACGGGTCCATAATAAAAAATCATTGCAGAAGAAACAATTCAGCTCAGGAGATGGATTGTAGCGGTAAGAAGGAGGAAAATACAATGCCAGTGGAGCTAGCAATCCAGAGGGAGCTGGTATATAGGAGGAAGGTAGCAGCATCTCACTTGGGCCCAAATAATGATTCCATTGAAGAGATTCTTCCATTGCAGCAGGTTAAATCATCAAACCAAGCTTCCCACCCAATGCCATTGTCAAGTCCAAGTTCATGGCAATTTTCAAGTTCAAACCTTTCAGGAACTAAGAGAAAGGAATTACCAACAAGCAGTGCTCATTATCCTCCTTTGCAACATCAACAACCATTTCATGGCAGTCTCAATCACAAAGCTAACACAGATAGTTTAAACTGTGAAATCTGTCAAGTATCTTGCTCAAGTCCATTCAATCTCAAGCAACATTTAATCGGTTCCAATCACCGGAAAAAATTGAGTGAGAAAACTGGAAGTGAGGGCAGAAGCAATCAGAGGCAATGGTGTGAACTGTGTAAAGTTTCATGTATGAGTGAAGACTTGCTCAAGCTGCACTTTCAAGGTCATAGGCATAAGGTTAATTTGCAGAACTTGGAAATTAGTAAGCACGGTGGGGAGGCTCCATATAAACAAAAATGGTGTGAACTATGCAAATTGTGGTGCATTAATGAGTTTTCCTTCAAGCAGCATCTTGAAGGTAAAAAGCACATCATTCAACTGCATGCTATGGAGAAAACCATAAAAGAGAAGAATGAAGTGACATTGTGA 837 0.4002 MSFNHYPSLMDYWTYLLGIENGSIIKNHCRRNNSAQEMDCSGKKEENTMPVELAIQRELVYRRKVAASHLGPNNDSIEEILPLQQVKSSNQASHPMPLSSPSSWQFSSSNLSGTKRKELPTSSAHYPPLQHQQPFHGSLNHKANTDSLNCEICQVSCSSPFNLKQHLIGSNHRKKLSEKTGSEGRSNQRQWCELCKVSCMSEDLLKLHFQGHRHKVNLQNLEISKHGGEAPYKQKWCELCKLWCINEFSFKQHLEGKKHIIQLHAMEKTIKEKNEVTL. 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03145 278 MobiDBLite consensus disorder prediction 87 140 - -
Seca3g03145 278 SUPERFAMILY beta-beta-alpha zinc fingers 222 264 IPR036236 -
Seca3g03145 278 Gene3D Classic Zinc Finger 231 271 - -
Seca3g03145 278 Gene3D Classic Zinc Finger 182 230 - -
Seca3g03145 278 Gene3D Classic Zinc Finger 138 181 - -
Seca3g03145 278 SMART ZnF_U1_5 187 221 IPR003604 GO:0003676|GO:0008270
Seca3g03145 278 SMART ZnF_U1_5 232 266 IPR003604 GO:0003676|GO:0008270
Seca3g03145 278 SMART ZnF_U1_5 145 179 IPR003604 GO:0003676|GO:0008270
Seca3g03145 278 SUPERFAMILY beta-beta-alpha zinc fingers 144 179 IPR036236 -
Seca3g03145 278 PANTHER OS06G0651300 PROTEIN-RELATED 107 183 - -
Seca3g03145 278 Pfam Zinc-finger of C2H2 type 236 259 - -
Seca3g03145 278 Pfam Zinc-finger of C2H2 type 149 172 - -
Seca3g03145 278 Pfam Zinc-finger of C2H2 type 191 214 - -
Seca3g03145 278 SUPERFAMILY beta-beta-alpha zinc fingers 183 221 IPR036236 -
Seca3g03145 278 SMART c2h2final6 148 172 IPR013087 -
Seca3g03145 278 SMART c2h2final6 235 259 IPR013087 -
Seca3g03145 278 SMART c2h2final6 190 212 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03145 Seca-Chr3 56563176 56564710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03145 71 270 C2H2 Transcription Factor Family AT5G61190 25.200 3.63e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca3g03145 zf-met 4.3e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03145 - - lang:109356456 247.669