Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03144 ATGAGTTTTGTTCAAAGAAGGAATACAAACAACACAAGAGAAGGATCATTAATGTCAGAGCAGGAAACCGATTCATGGGGCTTCCTGTTAGTCTGTTTCTTGATCCTCTTCTCAGGTAAATTTGTTGCTGGGGATTCATTGGATACTGACAAACAAGTTCTGCTGAAGCTGAAATCATACTTGGAAACTCAAACATTTGCAAATAAAGGAGGATATATAAACTGGAACAAGAACAGCTCAAATCCTTGTGAATGGTCAGGAATATCTTGCAGTCTCTTCAACGGGACAACATGGAGGGTTGTGAGTGTAGACATCTCTGCTAGTGAGATAGCTGGTAAGATATTCCAGAATTTCTCTCTTCTCACAGAGCTCACACACCTTGATGTCTCTTGGAATACACTTTCTGGGGAGATTCCTGAGGATTTGAGGAAGTGTCACAAGCTTCAGTATCTCAATATCTCCCGTAATATTCTTGAGGGAGAGCTGAATTTGACTGGCCTGACACGTTTGCAAACACTGGATTTGTCTGTGAATAGATTTCATGGTGATCTTGGGTTGAATTTCCCTGCCATTTGTGACAATTTAGTCACTTTGAATATTTCAGATAATTACTTTACTGGGAGGATTGATAGCTGCTTTGATCAATGCCTGAGATTGCAGAACTTGGATTTGAGCACCAACAATCTAGGTGGGGGCCTATGGACTGGAATTTCAAGGCTGAGAGAGTTTTCAATTTCAGAGAATAATCTCAGTGGGGTTGTTCCTTCCCATGCTTTTCCAGGGAATTGCAGTCTCATAAAACTGGATCTTTCAGTAAATGGGTTTGTTGGTAAACCCCCCAAGGAGGTTGCTAATTGTAAGAATTTAGAGATTCTCAATCTTTCTAGTAATAATTTTACTGGAGATATTCCCAAAGAAATTGGTTTCATTTCAGGTCTTCAATCATTGTTCTTGCAGAACAATAGTTTTTCAAGAGATATTCCACAGACCCTTTTGAATTTGTCCAACTTGTTTATCTTGGATTTGAGCAGAAACCGGTTTGGTGGGGAGATACAGGAGATTTTTGGGAAATTCAAGCAAGTGAAGTTTCTTCTGCTGCACTCAAATTCTTACACTGGAGGATTGAAAACATCAGGCATTTTTTCATTGACAAACGTTAGCAGGTTAGAGCTAAGCTTCAATAACTTTTCAGGTCCATTACCTGCTGAAATCTCTCAAATGTCTGGTCTCACTTTCCTATCATTATCCTCAAACCAGTTCAGTGGACCTATTCCATCTGAATTGGGAAAATTGACTCACCTGCTAGGACTTGATCTTTCCTCCAACAGTTTCAGTGGACCAATCCCACCAAGCCTTGGAAACTTGAGTTCCCTCTTGTGGTTAATGCTTGCACATAATTCATTAACTGGAGAAATCCCACCAGAGTTGGGAAACTGCTCAAGCTTGTTATGGTTGAACCTGGCAAACAACAAACTCTCTGGAAAATTTCCTTCTGAATTAACAAAAATTGGAAGAAATGCCATGGCCACATTTGAGTCAAATAAAAGAAGTATTGGCAGAGTTGTTGCTGGCAATAGTGAATGTTTATCAATGAGGAATTGGGTACCTGCTGATTACCGTCCATTCAGCTTTGTGTATACCATCCTAACAAGGAAGAATTGTAGAGCCCTTTGGGACAGATTGCTCAAAGGATATGGTATTTTCCCTATGTGCACATATGAGACCTCTTCAAGATCATTACATTCAGCTGGGTATGTTCAGTTAAGTGGGAACCAGCTAACTGGTGAAATTCCTCCAGAAATTGGGACCATGCTGAACTTCAGTATGTTGCATTTGGGGGACAACAAATTCTCTGGGAAATTCCCTCCAGAAATGGTGAGTATGCCACTTGTAGTCTTGAACATCACCAGAAACAAGTTTTCAGGTGAAATTCCAAAGGGAATTGGCAACATGAAGTGTCTGCAGAATCTTGATTTGTCTTGGAACAATTTCTCAGGGAAATTTCCCACAAGTTTGGTCAACTTGGATGAGCTTAGCCGTTTCAACATCTCATACAATCCTTTCATATCTGGTGCAGTCCCACCAGAAGGACACTTACTTACTTTTGACAAAGATTCATATTTGGGTGACCCTCTCCTAGACCTCCCAGAGTTCTTCAATAACATCACAGATGGAAGAAATAGGACCTTTCACAGGAGCCTGAAAAAATCCACAAAATGGTCTCTGTGTGTGGCCCTAACACTGTCTGTCTTGGTCTTTGGACTTCTTTTTCTAACAGTCTATTTCTTGGTGAAAGGTCCATCTGTGGAATCAGGATACCTCCTTAGGGATAAAAACCAGGGCCATGATTCAAGTAGCTCTGGATCCTCACCATGGTTGTCTGATACTGTTAAGATATTCCACTTGAACAACACAGTCTTCACACATGCTGACATCTTGGAAGCAACTGGAAACTTCACAGAAGATAGAGTCATAGGAAAGGGTGGATTTGGAACAGTGTATAGAGGAGTGTTTCCAGATGGGAGAGAAGTGGCAGTGAAGAAGCTCCAAAGGGAAGGAATTGAGGGTGAAAAAGAATTCAAAGCTGAAATGAAGGTTCTGAGTGGTCATGAATTTGGCTGGCCTCATCCAAACCTTGTCACTCTCTATGGGTGGTGCCTGCATGGTTCACAGAAGATACTGGTTTATGAGTACATAGGAGGTGGAAGCTTAGAGGATCTTGTGACTGATACAACAAAGTTAACATGGAGGAGGCGCCTAGAAGTGGCAATTGATGTGGCTAGAGCATTAGTCTATTTACACCATGAATGTTACCCTTCTATTGTACACAGAGATGTGAAGGCTAGTAATGTATTGCTAGACAAAGATGGGAAGGCCAAAGTCACAGACTTTGGACTTGCTAGAGTTGTTAATGCTGGAGATAGTCATGTGAGTACAATAGTGGCTGGCACAGTGGGGTATGTTGCACCAGAATATGGACAGACATGGCAAGCTACCACAAAAGGGGATGTGTACAGTTTTGGGGTATTGGCTATGGAGCTAGCAACAGGTAGGAGAGCAGTGGATGGAGGGGAAGAGTGTTTGGTGGAATGGGTTAGGCGTGTCACAGGTTGTGGAAGACATGGATTGAGTTACTCTGTGCCTGTTTTGTTGATGGGCTCTGGGCTAGTTGGGGGTGCAAAAGAAATGGGTAAGCTGCTACAAGTTGGGGTGAAGTGCACAGATGATACACCACAGGCTAGGCCTAACATGAAGGAGGTTCTAGCTATGTTGATTAAGATATACAATCCCATTGGAGACTCAAATTATGGGCATCTTGTTTAG 3324 0.4185 MSFVQRRNTNNTREGSLMSEQETDSWGFLLVCFLILFSGKFVAGDSLDTDKQVLLKLKSYLETQTFANKGGYINWNKNSSNPCEWSGISCSLFNGTTWRVVSVDISASEIAGKIFQNFSLLTELTHLDVSWNTLSGEIPEDLRKCHKLQYLNISRNILEGELNLTGLTRLQTLDLSVNRFHGDLGLNFPAICDNLVTLNISDNYFTGRIDSCFDQCLRLQNLDLSTNNLGGGLWTGISRLREFSISENNLSGVVPSHAFPGNCSLIKLDLSVNGFVGKPPKEVANCKNLEILNLSSNNFTGDIPKEIGFISGLQSLFLQNNSFSRDIPQTLLNLSNLFILDLSRNRFGGEIQEIFGKFKQVKFLLLHSNSYTGGLKTSGIFSLTNVSRLELSFNNFSGPLPAEISQMSGLTFLSLSSNQFSGPIPSELGKLTHLLGLDLSSNSFSGPIPPSLGNLSSLLWLMLAHNSLTGEIPPELGNCSSLLWLNLANNKLSGKFPSELTKIGRNAMATFESNKRSIGRVVAGNSECLSMRNWVPADYRPFSFVYTILTRKNCRALWDRLLKGYGIFPMCTYETSSRSLHSAGYVQLSGNQLTGEIPPEIGTMLNFSMLHLGDNKFSGKFPPEMVSMPLVVLNITRNKFSGEIPKGIGNMKCLQNLDLSWNNFSGKFPTSLVNLDELSRFNISYNPFISGAVPPEGHLLTFDKDSYLGDPLLDLPEFFNNITDGRNRTFHRSLKKSTKWSLCVALTLSVLVFGLLFLTVYFLVKGPSVESGYLLRDKNQGHDSSSSGSSPWLSDTVKIFHLNNTVFTHADILEATGNFTEDRVIGKGGFGTVYRGVFPDGREVAVKKLQREGIEGEKEFKAEMKVLSGHEFGWPHPNLVTLYGWCLHGSQKILVYEYIGGGSLEDLVTDTTKLTWRRRLEVAIDVARALVYLHHECYPSIVHRDVKASNVLLDKDGKAKVTDFGLARVVNAGDSHVSTIVAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRAVDGGEECLVEWVRRVTGCGRHGLSYSVPVLLMGSGLVGGAKEMGKLLQVGVKCTDDTPQARPNMKEVLAMLIKIYNPIGDSNYGHLV. 1108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03144 1107 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 256 351 - -
Seca3g03144 1107 Pfam Protein kinase domain 819 1022 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g03144 1107 SUPERFAMILY L domain-like 236 692 - -
Seca3g03144 1107 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 355 1093 - -
Seca3g03144 1107 Gene3D Ribonuclease Inhibitor 48 163 IPR032675 -
Seca3g03144 1107 Gene3D Ribonuclease Inhibitor 565 727 IPR032675 -
Seca3g03144 1107 CDD STKc_IRAK 825 1094 - -
Seca3g03144 1107 Gene3D Ribonuclease Inhibitor 164 344 IPR032675 -
Seca3g03144 1107 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 899 1098 - -
Seca3g03144 1107 Pfam Leucine Rich Repeat 194 216 IPR001611 GO:0005515
Seca3g03144 1107 Pfam Leucine rich repeat N-terminal domain 48 91 IPR013210 -
Seca3g03144 1107 SUPERFAMILY RNI-like 84 328 - -
Seca3g03144 1107 ProSitePatterns Serine/Threonine protein kinases active-site signature. 941 953 IPR008271 GO:0004672|GO:0006468
Seca3g03144 1107 SUPERFAMILY Protein kinase-like (PK-like) 800 1092 IPR011009 -
Seca3g03144 1107 Gene3D Phosphorylase Kinase; domain 1 785 898 - -
Seca3g03144 1107 FunFam Leucine-rich repeat receptor protein kinase MSP1 782 898 - -
Seca3g03144 1107 Pfam Leucine rich repeat 239 299 IPR001611 GO:0005515
Seca3g03144 1107 Gene3D Ribonuclease Inhibitor 345 526 IPR032675 -
Seca3g03144 1107 Pfam Leucine Rich repeat 124 137 IPR001611 GO:0005515
Seca3g03144 1107 SMART LRR_typ_2 310 334 IPR003591 -
Seca3g03144 1107 SMART LRR_typ_2 455 479 IPR003591 -
Seca3g03144 1107 SMART LRR_typ_2 121 145 IPR003591 -
Seca3g03144 1107 SMART LRR_typ_2 407 431 IPR003591 -
Seca3g03144 1107 SMART LRR_typ_2 237 261 IPR003591 -
Seca3g03144 1107 ProSiteProfiles Protein kinase domain profile. 819 1094 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g03144 1107 Gene3D Transferase(Phosphotransferase) domain 1 900 1101 - -
Seca3g03144 1107 ProSitePatterns Protein kinases ATP-binding region signature. 825 848 IPR017441 GO:0005524
Seca3g03144 1107 FunFam Putative LRR receptor-like serine/threonine-protein kinase 358 519 - -
Seca3g03144 1107 SMART serkin_6 819 1098 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03144 Seca-Chr3 56558287 56562233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03144 100 1091 Receptor kinase-like Gene Family AT1G55610 32.888 1.79e-145 465
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Seca3g03144 Pkinase 3.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03144 - - gmx:100781769 1731.07