LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca3g03139	ATGGGCTGTGTGAGTTCCAAGCAGGCGGTGTCGGTCACGCCCGCGATCGACCACTCAGGCGCGTTTGGAAGAAAAACGGTTATCGACTCGGATAATAATAAGAAGAGGAGTGAGTCAGGGAGAGCGAGTCAGAGCGAGGTCGGTGAGTCAGGGAGAACGAGTTCAAACGGTTGCGACTCCTTGAGCTTCAGGTTGGGGAACCTCCACAAGTACGTGCAAGGTGAACACGTGGCAGCTGGATGGCCGGCCTGGCTCAGCGCCGTCGCCGGTGAAGCCATTCACGGCTGGGTTCCGCTTCGTGCCGATGCCTTTGAAAAACTCGAAAAGATTGGACAGGGGACTTATAGCAGTGTGTTTCGGGCTAGAGAGCTTGAGACAGGGAAGATAGTGGCTCTGAAGAAGGTGCGGTTCGATAATTTCGAACCGGAGAGTGTGAGGTTCATGGCAAGGGAAATAATGATTCTGAGGAGACTCGATCATCCCAATATCATAAAACTGGAAGGGTTAATTACTTCCAGATTATCGTGTAGCATATACCTTGTGTTCGAGTACATGGAGCATGACATTACAGGGCTCTTATCCTCTCCTGATATCAAGTTCAGTGAACCACAGATTAAGTGCTACATGAAGCAGTTGTTATCTGGTCTTGAGCATTGTCACTCGCGGGGAGTGATGCACAGGGACATTAAGGGATCGAATCTTCTGGTGAATAATGAAGGGGTATTGAAGGTGGCGGATTTTGGATTGGCGAATTTCATCAGTGCTGGGCACAGGCAGCCCCTTACTAGTCGTGTTGTCACGTTGTGGTACCGTCCACCGGAGCTTTTGCTTGGTTCGACAGATTATGGTCCTTCTGTGGATCTTTGGAGTGTTGGCTGTGTGTTTGCAGAGCTACTTGTTGGGAAGCCTATACTTCAGGGGAGAACAGAGGTTGAGCAATTGCACAAAATTTTCAAGCTTTGTGGCTCCCCACCTGATGAATACTGGAAAAAGACTAGACTTCCCCATGCGACTTTGTTTAAGCCACAGCAACCATATGATAGCTGCCTCCGAGAGTCCTTTAGAGATTTGCCTCCAGCCAGTGTAAATCTACTACAAACTCTTCTTTCTGTCGAACCGTACAAACGTGCGACTGCCGCATCTGCTCTCTCATCTGAGTATTTCAAAACAAAACCTTATGCATGTGATCCATCAAGCTTGCCGATATACCCACCCAGCAAGGAAATTGATGCAAAACAAAGGGAGGAGTCCAGGAAAAAGATTGGTGGACGAGTTCGTGGAACTGAAACAAGAAAATCATCAAGAAAGCCACTAGGATTCAATAAACTAGCCCCAGCAGAGGATTTGGCAAGTCAAACCCAGACCTCCCAAAAGGTCAACGGTAGATCATTCCGCGTCCTTAAAGAAGAAAAGACTAACATAGGTGAGGAGGCACAAAAGCCATCCAGTGGCAAACCTGAAGATGCTTCCCATATGAAGAATGCGTCTCAGGGAGATATTCCCTTTTCTGGACCATTACAAGTTTCAACATCAAGCGGCTTTGCATGGGCAAAAAGCCGTAGAGATGAGACTTCAATTCGATCCCATTGTCGAACTATTTCTCGAGGACATATTTTCAATCCTTTAGAACCTTCTAAATTAAATTCAAGGAATAATTCAGACACCATAAACCAGGAAAATAAGGAGTTTTGTGGAAGACACACCAACTCTAGGGGCCATGATCTGCTTGAAATTTCTAAGCTTTCAATGCAGAATCAGTGGAGCAAGTTTGATCGCCCTGATTCATTTGATGCCTCTGATGAGTACCACTCGCAAGAACTCTCTATGGCACTTTATCATAGAGAAGATTCAGTATCCAAGAGAAGTAACATAATAATCATAAATGGATCAATATCTGATAAAGCTCTTACTCTTGAGTTTTAG	1923	0.4607	MGCVSSKQAVSVTPAIDHSGAFGRKTVIDSDNNKKRSESGRASQSEVGESGRTSSNGCDSLSFRLGNLHKYVQGEHVAAGWPAWLSAVAGEAIHGWVPLRADAFEKLEKIGQGTYSSVFRARELETGKIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMEHDITGLLSSPDIKFSEPQIKCYMKQLLSGLEHCHSRGVMHRDIKGSNLLVNNEGVLKVADFGLANFISAGHRQPLTSRVVTLWYRPPELLLGSTDYGPSVDLWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKTRLPHATLFKPQQPYDSCLRESFRDLPPASVNLLQTLLSVEPYKRATAASALSSEYFKTKPYACDPSSLPIYPPSKEIDAKQREESRKKIGGRVRGTETRKSSRKPLGFNKLAPAEDLASQTQTSQKVNGRSFRVLKEEKTNIGEEAQKPSSGKPEDASHMKNASQGDIPFSGPLQVSTSSGFAWAKSRRDETSIRSHCRTISRGHIFNPLEPSKLNSRNNSDTINQENKEFCGRHTNSRGHDLLEISKLSMQNQWSKFDRPDSFDASDEYHSQELSMALYHREDSVSKRSNIIIINGSISDKALTLEF.	641

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca3g03139	640	MobiDBLite	consensus disorder prediction	23	55	-	-
	Seca3g03139	640	Pfam	Protein kinase domain	104	388	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca3g03139	640	ProSiteProfiles	Protein kinase domain profile.	104	388	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca3g03139	640	Gene3D	Transferase(Phosphotransferase) domain 1	187	425	-	-
	Seca3g03139	640	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	224	236	IPR008271	GO:0004672\|GO:0006468
	Seca3g03139	640	SUPERFAMILY	Protein kinase-like (PK-like)	97	395	IPR011009	-
	Seca3g03139	640	MobiDBLite	consensus disorder prediction	399	506	-	-
	Seca3g03139	640	MobiDBLite	consensus disorder prediction	463	487	-	-
	Seca3g03139	640	MobiDBLite	consensus disorder prediction	28	42	-	-
	Seca3g03139	640	CDD	STKc_CDK9_like	104	388	-	-
	Seca3g03139	640	Gene3D	Phosphorylase Kinase; domain 1	91	186	-	-
	Seca3g03139	640	SMART	serkin_6	104	388	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca3g03139	640	PANTHER	CELL DIVISION PROTEIN KINASE	102	392	-	-
	Seca3g03139	640	ProSitePatterns	Protein kinases ATP-binding region signature.	110	133	IPR017441	GO:0005524
	Seca3g03139	640	MobiDBLite	consensus disorder prediction	447	462	-	-
	Seca3g03139	640	FunFam	probable serine/threonine-protein kinase At1g54610	187	426	-	-
	Seca3g03139	640	MobiDBLite	consensus disorder prediction	408	436	-	-
	Seca3g03139	640	FunFam	probable serine/threonine-protein kinase At1g54610	91	186	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca3g03139	Seca-Chr3	56419031	56425400	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca3g03139	96	447	Core Cell Cycle Gene Families	AT5G10270	48.913	8.78e-117	356

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Seca3g03139		Pkinase	6.7e-70	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca3g03139	-		-	gmx:100803328	1135.94