Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03136 ATGGCCACTCAATCCCCTCCCTCTCCACTCGACAACGTCCTTCGTGACGTTGACGACTACGTTTTGGCAAATGAACCTGAAGGCTTGGCATCGGACACGCTTCATTATGTTTACGAGCTTGTGCAGAATGGCAATGCAGCATTTCGAGAAAACAGAATGGAAGAGGCGATCAGCTTTTACTCAAGAGCCAATAACATCAAATCTAGTGATCCAATCATCCTCAGCAATCGAAGCACAGCTTATATTAGGATTAGCCAATATTTAATGCACAGAACACCATCATCTTCGGAACATAGGCCATTGACTGGGCTTGATCCCACAACACTTGCTGAACTGGGTTTGAAGGATGCCGAGAAGCTTGTTGAACTCCAAAGTAATTCAGTAAAATCATACCTTTTAAAGGCCAATGCTCTTCGTCTGTTGGAGAAATTTGAGAAGGCTCGTGATGTTATTCTTTCAGGACTTCAAGTTGATCCTTTTAGTAATTCTCTTCGGGATTCTCTTCAACATTTGGAAAGAGTATCATCTAGTTCAACACGGGTAAGTAGACAAGGACAACCAGAGCGTAATGATGACTTTGATTGCACTCTCTGCCTGAAGTTACTGTATGAACCTGTTACAACTCCTTGTGGACATTCATTTTGCCGTTCATGTCTATTTCAGTCAATGGATTGTGGGAACAGATGCCCATTGTGCAGGACAGTTCTGTTTATTAGTCCTAGAACATGTTCCATCAGTGTGACATTGAAGAACATCATACAAAAGAACTTTCCTGAGGAATATGCTGAAAGGAAGCAAGAGAATGAAGGTTTAATCAACGCTGGTGTAGATTTGCTCCCTCTTTTTGTCATGGATGTCGTCATACCATGTCAAAAGTTTCCGCTCAATATATTTGAACCTCGGTATAGACTTATGATAAGAAGAATAATGGAAGGCAATCATCGGATGGGAATGGTTATAATTGATTCTTCAACAGGTTCCTTAGCTGAGTATGCCTGTGAAGTGGAAATCACAGAGTGTGAGCCACTTCCGGATGGTCGTTTTTATATAGAGTTTTTTTTTATAATATTTCCATGTGTGAGAAAGTATTACTATGTGCAGATTGAAAGTCGTAGGAGATTTCGCATCATCCGTTCTTGGGATCAAGATGGGTATCGGGTTGCAGAGGTTGAATGGATACAGGATATTATGCCGCCAGAAGGGACAAGAGAGAGAGAAACTTTACAGGAATTGACATATAACGCAGCAGAAAGTGCCCGGTCATGGATAGCAAGAGCTAAAGAAGCAGCAAGACAAGATCAAAGAAGACTTGAGAGACTCCTGAATGTTGAAGCAATGATGCCCTCACCAAAAGACCCCGAGCGCTTTAGTTTTTGGCTGGCTACCCTCTCCAATCGGAGGCCTTCGGAAAGATTGGATCTCCTACGTATTAAAGATACCACAGAGAGGATTAGACGAGGCCTGATATTTCTTCGACAAGAGGAACAAGGCTGCAGAATTCAGTAA 1506 0.4223 MATQSPPSPLDNVLRDVDDYVLANEPEGLASDTLHYVYELVQNGNAAFRENRMEEAISFYSRANNIKSSDPIILSNRSTAYIRISQYLMHRTPSSSEHRPLTGLDPTTLAELGLKDAEKLVELQSNSVKSYLLKANALRLLEKFEKARDVILSGLQVDPFSNSLRDSLQHLERVSSSSTRVSRQGQPERNDDFDCTLCLKLLYEPVTTPCGHSFCRSCLFQSMDCGNRCPLCRTVLFISPRTCSISVTLKNIIQKNFPEEYAERKQENEGLINAGVDLLPLFVMDVVIPCQKFPLNIFEPRYRLMIRRIMEGNHRMGMVIIDSSTGSLAEYACEVEITECEPLPDGRFYIEFFFIIFPCVRKYYYVQIESRRRFRIIRSWDQDGYRVAEVEWIQDIMPPEGTRERETLQELTYNAAESARSWIARAKEAARQDQRRLERLLNVEAMMPSPKDPERFSFWLATLSNRRPSERLDLLRIKDTTERIRRGLIFLRQEEQGCRIQ. 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03136 501 Gene3D - 427 493 - -
Seca3g03136 501 SMART tpr_5 37 70 IPR019734 GO:0005515
Seca3g03136 501 SMART tpr_5 128 161 IPR019734 GO:0005515
Seca3g03136 501 SUPERFAMILY TPR-like 36 163 IPR011990 GO:0005515
Seca3g03136 501 SMART lon_5 278 493 IPR003111 -
Seca3g03136 501 SUPERFAMILY RING/U-box 190 258 - -
Seca3g03136 501 Gene3D Tetratricopeptide repeat domain 36 173 IPR011990 GO:0005515
Seca3g03136 501 ProSiteProfiles Zinc finger RING-type profile. 195 233 IPR001841 -
Seca3g03136 501 Coils Coil 423 443 - -
Seca3g03136 501 SMART ring_2 195 232 IPR001841 -
Seca3g03136 501 Pfam Zinc finger, C3HC4 type (RING finger) 195 232 - -
Seca3g03136 501 Gene3D - 277 395 IPR046336 -
Seca3g03136 501 ProSiteProfiles Lon N-terminal domain profile. 276 493 IPR003111 -
Seca3g03136 501 SUPERFAMILY PUA domain-like 279 491 IPR015947 -
Seca3g03136 501 Pfam ATP-dependent protease La (LON) substrate-binding domain 279 492 IPR003111 -
Seca3g03136 501 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 180 274 IPR013083 -
Seca3g03136 501 PANTHER RING FINGER PROTEIN 127 32 494 - -
Seca3g03136 501 ProSitePatterns Zinc finger RING-type signature. 210 219 IPR017907 -
Seca3g03136 501 CDD RING-HC_LONFs_rpt2 192 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03136 Seca-Chr3 56352713 56362720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03136 186 236 C3H Transcription Factor Family AT1G74990 35.185 3.23e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03136 - - lja:Lj0g3v0312049.1 855.514