Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03135 ATGAGGGTATGGCTTGGGACATTTGAGACAGCTGAAGAAGCAGAAAGAGCATATGATGAAGCGGCCATTTTGATGAGTGGAAGGAATGCCAAAACAAACTTCCCAGTTGTTGATCACAACCCAATGGGGAATCACATTTCTACTTCTTTAACAACATTGTCTGCAGTTCTGAGTGCAAAGCTAAGGAAGTGTTGCAAGTCCCCTTCACCTTCCCTCACTTGTCTAAGGCTTGACACTGAGAATTCTGACCTTGGGGTGTGGCAGAAGAGAGCAAGACCTTGTTCTGACTCAAACTGGATCATGATGAGTACATTATGA 318 0.4434 MRVWLGTFETAEEAERAYDEAAILMSGRNAKTNFPVVDHNPMGNHISTSLTTLSAVLSAKLRKCCKSPSPSLTCLRLDTENSDLGVWQKRARPCSDSNWIMMSTL. 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03135 105 SUPERFAMILY DNA-binding domain 2 36 IPR016177 GO:0003677
Seca3g03135 105 SMART rav1_2 2 41 IPR001471 GO:0003700|GO:0006355
Seca3g03135 105 Pfam AP2 domain 2 26 IPR001471 GO:0003700|GO:0006355
Seca3g03135 105 Gene3D AP2/ERF domain 1 37 IPR036955 GO:0003700|GO:0006355
Seca3g03135 105 CDD AP2 2 37 IPR001471 GO:0003700|GO:0006355
Seca3g03135 105 ProSiteProfiles AP2/ERF domain profile. 1 35 IPR001471 GO:0003700|GO:0006355
Seca3g03135 105 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 2 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03135 Seca-Chr3 56342080 56342397 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03135 2 105 AP2-EREBP Transcription Factor Family AT1G15360 63.248 1.54e-39 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca3g03135 AP2 7.9e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03135 - - gmx:100785898 160.614