Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03131 ATGAAGCTTCATTTCAGCAAGATCTACTCATTTGCGTGTGGCAAAACAACTTTTAGGAGAGATCATTCACAGATTGGGGGGCTTGGTTATTCCAGGGTGGTCCTATGCAATGAACCAGATGGCTCTGAGGCAGAGTTTAGGTATTACGCAGATAATTCTGTCAGGTCCACAAAATATACTGTTGCCACTTTCTTGCCTAAGTCACTGTTTGAGCAGTTTAGGAGGGTAGCTAATTTCTATTTCTTGGTAGCTGGTATCTTAGCCTTCACAAAGCTTGCTCCTTATACAGCTGTTAGTGCTGTCTTTCCTCTGTGTATCATCATTGGGGGGACTATGTTGAAAGAGGGTATTGAAGATTGGCGTCGGAAAAAGCAGGATATTAAGGTGAACAATAGAAGAGTTATGTTTCATAGAGGTGATGGAATTTTTGAATATACGGAGTGGAAGAATCTCAGGGTGGGGAATATTGTGAAGATAAAGAAGGATGAATTCTTCCCTGCTGACCTCCTCCTGCTTTCATCTAGTTATGAGGATGCAGTTTGCTATGTTGAGACCATGAACTTGGATGGTGAGACAAATTTGAAGTTAAAACAAGGGTTGGATGTAACTTCTTCCTTAAATGAGGACTTCAAGTTCCGCAATTTTAAAGCTGCGGTCAAATGTGAAGACCCAAATGCAAATTTGTACTCCTTTGTCGGGAGCATGGAGTTTGAAGAGCAAAAATATGCCCTTTCTCCTCAGCAACTTCTTCTGAGAGACTCCAAACTTCGTAATACAGACTACATATTTGGAGCAGTCATCTTTACTGGTCATGATACAAAGGTTATTCAAAATGCCACTGATCCCCCTTCAAAAAGAAGCAAAATTGAGAAGAAGATGGATAAGATTATCTACTTCTTGTTTTGTGTTTTATTTCTAATTGCATTTGTTGGATCTATTCTCTTTGGCATTGCAACTAAACATGACCTGGACAATGGGAGGATGAAAAGATGGTATCTAAGACCAGATGATTCCGCCATTTTTTTCGATCCAAAAAGATCTACTGCAGCTGGAATATTTCATTTTTTGACAGCCTTAATGTTGTATAGCTTCTTCATTCCCATTTCCTTGTATTTCTCAATAGAAATTGTTAAAATCCTTCAGAGCATCTTCATCAATCAAGATATCCATATGTACTATGAAGAAGCAGACAGACCAGCTCGCGCTCGTACTTCAAACTTGAATGAGGAACTTGGCCAAGTTGACACAATACTTTCTGATAAAACTGGAACTCTGACCTGCAACTCAATGGAGTTCATCAAATGTTCTATTGCTGGAGTAGCTTATGGCCGTGGTGTTACAGAGGTTGAGCAAGCCATCGGTAGAAGTTATAGTTCACCTATTATTCATGAGCATGTTAATAGGTTAAAATCAGATGAAATCAGGGAATCTCTTGATAGAAAAGTACCCATCAAAGGTTTTAACTTCATAGATGAAAGGATAATGAATGGGAACTGGGTTAATGAGCCTCATGCAGATGTCATACAGAAGTTTTTTCGCTTATTGGCTGTCTGTCATACTGCCGTACCAGAAGTGGATGAAGATACAGGAAAGGTCTCATATGAAGCTGAATCTCCAGATGAAGCAGCATTTGTGATTGCTTCAAGAGAAGTTGGTTTTAAATTCTATAAAAGGACTCAGACTAGTTTATCAATGTATGAGTTGGATCCAGTTTCTGGTGATGAAGTTGAAAGGATGTACAAGCTTCTCAATGTTTTAGAATTCAATAGCTCAAGGAAGCGAATGTCGGTGATAGTGAAAGATGAAGAAGGGAGAATTTTGCTACTTTGTAAAGGTGCTGACAGTGTCATGTTTGAAAGGCTTGCCAAGAATGGGAGGGAGTTTGAAGAGAAAACTTTGGAGCATGTGCATGAATATGCTGATGCAGGTCTAAGGACCCTAATTCTGGCTTACCGTGAACTTGATGAAGAAGAGTACAAGGAGTTTGATAATAAATTTTCTGAAGTAAAAAATTTAGTTACTATAGATCGGGAAACGCTGATTGAGGAAGTATCAGATAAGATTGAGAGGAATCTATTCCTTCTGGGTGCCACAGCTGTAGAGGACAAGCTCCAAAATGGGGTACTTTAG 2130 0.393 MKLHFSKIYSFACGKTTFRRDHSQIGGLGYSRVVLCNEPDGSEAEFRYYADNSVRSTKYTVATFLPKSLFEQFRRVANFYFLVAGILAFTKLAPYTAVSAVFPLCIIIGGTMLKEGIEDWRRKKQDIKVNNRRVMFHRGDGIFEYTEWKNLRVGNIVKIKKDEFFPADLLLLSSSYEDAVCYVETMNLDGETNLKLKQGLDVTSSLNEDFKFRNFKAAVKCEDPNANLYSFVGSMEFEEQKYALSPQQLLLRDSKLRNTDYIFGAVIFTGHDTKVIQNATDPPSKRSKIEKKMDKIIYFLFCVLFLIAFVGSILFGIATKHDLDNGRMKRWYLRPDDSAIFFDPKRSTAAGIFHFLTALMLYSFFIPISLYFSIEIVKILQSIFINQDIHMYYEEADRPARARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIAGVAYGRGVTEVEQAIGRSYSSPIIHEHVNRLKSDEIRESLDRKVPIKGFNFIDERIMNGNWVNEPHADVIQKFFRLLAVCHTAVPEVDEDTGKVSYEAESPDEAAFVIASREVGFKFYKRTQTSLSMYELDPVSGDEVERMYKLLNVLEFNSSRKRMSVIVKDEEGRILLLCKGADSVMFERLAKNGREFEEKTLEHVHEYADAGLRTLILAYRELDEEEYKEFDNKFSEVKNLVTIDRETLIEEVSDKIERNLFLLGATAVEDKLQNGVL. 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03131 709 Pfam Cation transport ATPase (P-type) 517 621 - -
Seca3g03131 709 SUPERFAMILY HAD-like 406 430 IPR036412 -
Seca3g03131 709 ProSitePatterns E1-E2 ATPases phosphorylation site. 420 426 IPR018303 -
Seca3g03131 709 Gene3D - 110 280 - -
Seca3g03131 709 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 486 663 IPR023299 GO:0000166
Seca3g03131 709 SUPERFAMILY Calcium ATPase, transmembrane domain M 47 412 IPR023298 -
Seca3g03131 709 FunFam Phospholipid-transporting ATPase 537 695 - -
Seca3g03131 709 FunFam Phospholipid-transporting ATPase 110 280 - -
Seca3g03131 709 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 33 708 - -
Seca3g03131 709 SUPERFAMILY Calcium ATPase, transduction domain A 134 278 IPR008250 -
Seca3g03131 709 Gene3D - 471 702 IPR023299 GO:0000166
Seca3g03131 709 Pfam Phospholipid-translocating ATPase N-terminal 36 99 IPR032631 -
Seca3g03131 709 NCBIfam phospholipid-translocating P-type ATPase 49 708 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03131 Seca-Chr3 56303105 56307842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03131 3 708 Primary Pumps ATPases AT1G68710 73.833 0.0 1116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03131 K01530 - gmx:100798329 1233.39