Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03130 ATGCAAGAAAGACGATGGATACTCATGCTCGCATCAAGGGAAAGTGTGCACCGTCAGATATCTGAAGGTGCTAAACTGCTTTCTGCATCCATAGGGACCTCTCAGCAGGCATTTGCTCTGATAATTGATGGAAAATCACTTACTTATGCTCTAGAGGATAATATAAAGAACATGTTTCTAGAGCTTGCAACTCGTTGTGCATCTGTTATCTGCTGTCGCTCATCACCAAAGCAGAAGGCACTGGTTACTAGACTGGTCAAGTCTGGAACTGGTAAAACAACATTAGCCATTGGTGATGGAGCTAATGATGTGGGAATGCTTCAAGAAGCACACGTAGGGGTTGGAATCAGTGGTGCTGAAGGAATGCAGGCTGTTATGTCTAGCGATATTGCGATAGCACAGTTCCGGTATTTGGAAAGATTACTTCTTGTACATGGACATTGGTGTTACCGGAGGATGTCATCAATGATATGCTATTTTTTCTACAAGAATATCACATTTGGCTTCACTCTGTTCTTATATGAGGTGTATGCATCATTCTCTGGACAGTCTGCATACAACGACTGGTTTTTATCTCTCTACAGTGTCTTCTTTTCATCACTACCTGTGATTGCCCTTGGGGTCCTTGACCAGGATGTATCTGCCAAATACTGCCTCAAGTTTCCTATCTTATACCAAGAAGGCGTACAAAATGTCCTCTTTAGCTGGCGTCGAATACTCACCTGGATGCTCAATGGATTTATTAGTGCCATAATGATATTTTTCTTCTGCACAAAAGCAATGGAGGTTCAGGCCTTTGATGAGGAGGGAAGAACTGCTGGAAAAGATATGTTGGGAGCAACCATGTATACTTGTGTGGTTTGGGTTGTAAACTTGCAGATGGCACTTACACTACGCTACTTCACCTTGATACAGCATATTTTCATCTGGGGTTCCGTTGCTTTTTGGCATCTCTTCCTCTTAGTATATGGAGTAATGCCTCCAAGCATTTCTAGAAATACTTACAAAGTCTTCATTGAAACTCTTGCTCCATCTCCTTCCTTTTGGATTGTCACATTCTTTGTGGTGATCTCTACACTTATACCATACTTCTCATACTCGGTAATTCAGATGTGGTTCTTTCCCATGTACCACGAAATGGTACAATGGATGAGGTATGAGGGGAAGACAAATGATCCTGAAATACTGTGA 1191 0.4198 MQERRWILMLASRESVHRQISEGAKLLSASIGTSQQAFALIIDGKSLTYALEDNIKNMFLELATRCASVICCRSSPKQKALVTRLVKSGTGKTTLAIGDGANDVGMLQEAHVGVGISGAEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRMSSMICYFFYKNITFGFTLFLYEVYASFSGQSAYNDWFLSLYSVFFSSLPVIALGVLDQDVSAKYCLKFPILYQEGVQNVLFSWRRILTWMLNGFISAIMIFFFCTKAMEVQAFDEEGRTAGKDMLGATMYTCVVWVVNLQMALTLRYFTLIQHIFIWGSVAFWHLFLLVYGVMPPSISRNTYKVFIETLAPSPSFWIVTFFVVISTLIPYFSYSVIQMWFFPMYHEMVQWMRYEGKTNDPEIL. 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03130 396 SUPERFAMILY Calcium ATPase, transmembrane domain M 146 375 IPR023298 -
Seca3g03130 396 Pfam Phospholipid-translocating P-type ATPase C-terminal 125 375 IPR032630 -
Seca3g03130 396 NCBIfam phospholipid-translocating P-type ATPase 31 382 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Seca3g03130 396 Gene3D - 5 137 IPR023214 -
Seca3g03130 396 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 30 386 - -
Seca3g03130 396 SUPERFAMILY HAD-like 54 152 IPR036412 -
Seca3g03130 396 NCBIfam HAD-IC family P-type ATPase 69 179 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03130 Seca-Chr3 56299563 56302446 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03130 8 396 Primary Pumps ATPases AT3G25610 74.807 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03130 K01530 - gmx:100776955 684.871