Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03127 ATGGAGTCTGAGCAGCTTAATTTGAATAGAGAAGCTAGTGCTGGTGGGGGTGGTGTAAATAATGGTAAGAGTGGTGATGGATTTATTGATAGGAGTAAAGTGCGGATTTTGTTATGTGATAACGATTCCAAGAGTTCTGAAGAGGTTTTTACGCTTCTCTTGAGTTGCTCTTATCAGGTTACTTCAGTAAAGTCAGCAAGACAGGTAATTGATGCATTGAATGCAGAGGGGCAATATATAGATATCATACTAGCTGAAGTTGACCTTCCAATGAAGAAGGGCATGAAGATGTTGAAGTACATAGCACGGGACAAAGACCTACGCAGAATTCCTGTTATAATGATGTCCGCACAAGATGAGGTATCAGTTGTTGTTAAGTGCTTGAGACTTGGAGCAGCAGACTATCTAGTAAAGCCTTTACGCACTAATGAACTTTTAAATTTGTGGACGCACATGTGGAGAAGGAGGCGCATGCTTGGATTTGCAGAGAAGAACATCTTGAATTATGACTTTGATCTGGTAGCATCAGACCCTAGTGATGCCAATACAAACAGTACCACCTTGTTCTCTGATGACACAGATGACAAGTCCAAGAGAAGCACTATTCCAGAGACAGGAATATCAGTTCAACAAGATTTGGCCTTTGCAAATAATTGTACCTTTCAGAATGTAAACTTTGACATTGACTCTACTATTGCAACTGCTGCTTCCGTTGGGGAACCTCCAGATGTTCATGCACCTGAATGTCAGCCTGATGTGCATGGAGTTAATGATCACCCAACAGGACAATTTTCTTCTGGTCCAAAGAAGAGTGGACTGAGGATTGGGGAGTCATCAGCCTTCTTCACATATGTTAAAGCATCAATGCTGAAGAGAAACTTCGAAGGGATTGTTCCTGCTGACAACAATGCTGCTACACACGTGAGGATGGAAGTTATGTATCAAGCAGGTGCTCAACAAGGGGTTAATGACCATCAAATACGTGAAAATGGAGAGGCATGTGAAAGTCAATCGCAAGATGACTTACCCAGCAGCAATAGTATACCTGATTCTTTTTCTATTGAGAGGTCTTGTACTCCACCTGCATCAATGGAAGTTTCACCGCAAAAGCACTACAAGGAAGAAAATTTACATCATGGGGTGATGCATTCAAGAAATGGGACTCATCGTTCTGAGCTCGAAGTATCTGGCATGGCTGCCCAACATGCTTATCCATATTATATTTCAGGAGTTGTTAATCATGTTATGATGCCTTCATCAGCACAACTGTATCAGAAGAATATCCAGGACCTGCAGAATCATGCTAGTTCTGCTATAATTGCACAGTACAATCATCTTCCACAAGGTGGTCCTCATGCAACGGGGATGACATCTTTCCCATATTACCCAATGAGTATATGCTTGCAACCTGGTCAGATTCCTACAGCTCATCCATGGCCATCATTTGGAAGTTCAAGTTCATCTGAAGCAAAATTGAGTCAAGTTGATAGGAGAGAAGCAGCATTGATGAAGTTCAGACAGAAAAGGAAAGAACGTTGCTTTGATAAGAAAATTAGGTATGTCAATCGGAAACAACTTGCTGAAAGGCGGCCTCGTGTGAGGGGACAATTTGTCAGAAAGTTGAATGGTGCTAATGTGGATCTTAATGGACAGCCTGATTCGATTGACTATGATGAAGAGGAAGAAGAGGATGAAGATGACCAGGGAGCTAAAGATTCCTCTCCCGAGGATGCTTGA 1737 0.4203 MESEQLNLNREASAGGGGVNNGKSGDGFIDRSKVRILLCDNDSKSSEEVFTLLLSCSYQVTSVKSARQVIDALNAEGQYIDIILAEVDLPMKKGMKMLKYIARDKDLRRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGFAEKNILNYDFDLVASDPSDANTNSTTLFSDDTDDKSKRSTIPETGISVQQDLAFANNCTFQNVNFDIDSTIATAASVGEPPDVHAPECQPDVHGVNDHPTGQFSSGPKKSGLRIGESSAFFTYVKASMLKRNFEGIVPADNNAATHVRMEVMYQAGAQQGVNDHQIRENGEACESQSQDDLPSSNSIPDSFSIERSCTPPASMEVSPQKHYKEENLHHGVMHSRNGTHRSELEVSGMAAQHAYPYYISGVVNHVMMPSSAQLYQKNIQDLQNHASSAIIAQYNHLPQGGPHATGMTSFPYYPMSICLQPGQIPTAHPWPSFGSSSSSEAKLSQVDRREAALMKFRQKRKERCFDKKIRYVNRKQLAERRPRVRGQFVRKLNGANVDLNGQPDSIDYDEEEEEDEDDQGAKDSSPEDA. 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03127 578 Gene3D - 34 217 - -
Seca3g03127 578 SMART REC_2 34 149 IPR001789 GO:0000160
Seca3g03127 578 MobiDBLite consensus disorder prediction 330 370 - -
Seca3g03127 578 Pfam Response regulator receiver domain 36 147 IPR001789 GO:0000160
Seca3g03127 578 Pfam CCT motif 498 540 IPR010402 GO:0005515
Seca3g03127 578 ProSiteProfiles CCT domain profile. 498 540 IPR010402 GO:0005515
Seca3g03127 578 MobiDBLite consensus disorder prediction 553 578 - -
Seca3g03127 578 PANTHER TWO-COMPONENT RESPONSE REGULATOR 34 223 IPR045279 GO:0009736
Seca3g03127 578 MobiDBLite consensus disorder prediction 541 578 - -
Seca3g03127 578 MobiDBLite consensus disorder prediction 336 364 - -
Seca3g03127 578 ProSiteProfiles Response regulatory domain profile. 35 153 IPR001789 GO:0000160
Seca3g03127 578 SUPERFAMILY CheY-like 30 159 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03127 Seca-Chr3 56267028 56271754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03127 23 577 Response Regulator Gene Family AT5G61380 50.880 0.0 538
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Seca3g03127 Response_reg 2.2e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03127 K12127 - gmx:100799728 924.85