Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03120 ATGGAAAACGTTTCAGCTTTTTGTAAGGAAGAGGATCAGATGGTTTTGCCACCTGGTTTTCGGTTTCATCCAAGTGATGAAGAGCTTATTAGTCATTACCTTTACAAAAGGGTAACTGACACCAATTTCTCTGCTAGAGCCATTGGAGAGGTGGACTTAAACAAATCTGAGCCTTGGGATTTGCCATGGAAAGCCAAAATGGGAGAAAAAGAGTGGTACTTTTTCTGTGTGAGAGACAGAAAATACCCAACTGGTTTGAGGACTAACAGAGCTACTGGAGAAGGATACTGGAAGGCCACAGGGAAAGATAAGGAGATTTACAGAGGAAAATCTCTGGTTGGAATGAAGAAAACTCTTGTTTTCTACAAAGGAAGAGCACCTAAAGGAGAGAAAACTAACTGGGTCATGCATGAATACAGACTTGAGGGTAAATTCTCTGTTCACAACCTCCCTAAAACTGCAAAGGTACTTTGGCTTGACCCTTTTTTCTCTCATGTGAATCCCTTTTGCTTTTCTCCCATTTTTAATGAATGGGTGATTTGCAGGGTGTTTCAGAAGAGTTCAGGTGGCAAGAAAACTCATATTTCTGGGATAATGAGGTTGGACTCTTTAGGAAATCAATTGGGTTCTTCTGATCTGCCACCTCTTACAGATTTCACACCTCTCATTGGCAAAACCAAAGAACAACTGAGTGTGACTGAATCTGGTTACGTGCCCTGCTTCTCCAATCCAATTGATATTCAAAGAAACCAAGGTGGGATCTTTGATTCCTTCAGCAACTCCCTTATAGGGGTTCCTTCTACTAGTTCATTCTGTCCTACTCAAGGGGTTCAAGCCCCACCAAATTTGCCATTACCCAATTCTGTTTACAGCACCCAAGACCAAACTATGCTCAGAGCCTTACTTGATAACCATGGATCAAACTTAAGGAATGGTTTCAATTTCAAATCACAGGGTGATATGGTAAGTGTCTCTCAGCAAACAGGTTTGACTAGTGATGTGAATGCTGAAAACTCTTCTGTTGTATCAAATTTTGACATGGGTAGTAGGAGGCCCTTTAACAATCAGCAGCACCCACCAATGGACCTTGCCAGCATGTGGAATTACTAA 1110 0.4162 MENVSAFCKEEDQMVLPPGFRFHPSDEELISHYLYKRVTDTNFSARAIGEVDLNKSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATGEGYWKATGKDKEIYRGKSLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLEGKFSVHNLPKTAKVLWLDPFFSHVNPFCFSPIFNEWVICRVFQKSSGGKKTHISGIMRLDSLGNQLGSSDLPPLTDFTPLIGKTKEQLSVTESGYVPCFSNPIDIQRNQGGIFDSFSNSLIGVPSTSSFCPTQGVQAPPNLPLPNSVYSTQDQTMLRALLDNHGSNLRNGFNFKSQGDMVSVSQQTGLTSDVNAENSSVVSNFDMGSRRPFNNQQHPPMDLASMWNY. 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03120 369 Pfam No apical meristem (NAM) protein 17 141 IPR003441 GO:0003677|GO:0006355
Seca3g03120 369 ProSiteProfiles NAC domain profile. 16 186 IPR003441 GO:0003677|GO:0006355
Seca3g03120 369 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 294 - -
Seca3g03120 369 Gene3D NAC domain 25 190 IPR036093 GO:0003677|GO:0006355
Seca3g03120 369 SUPERFAMILY NAC domain 12 186 IPR036093 GO:0003677|GO:0006355
Seca3g03120 369 FunFam NAC domain-containing protein 100-like 25 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03120 Seca-Chr3 56188340 56191022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03120 14 369 NAC Transcription Factor Family AT5G07680 55.978 3.49e-125 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca3g03120 NAM 9.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03120 - - gmx:100798002 514.998