Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03115 ATGGATACGGATCCTTTCAATTTTTCACATATGGATATGCAAGGTGATTTCATTCCAGATAATATACCGGTAACACATTTTGACTCTCTTGATGACATGCCACAATCTCCTGTTGTTGATGAACCCCATGTCGAGCCTTATGTTGGGATGGTATTCAATTCATTAGAAGAAGTTGTAGGATTTTATAATTCATTTGCAAAGGCAAAAGGGTTTGGGATTCGTACTCGCTCCAGTAAAAAGAATTATTGCATTTTGGTATGTGTTAGGGAAGGTGAACGTCCAGTGAAAAGTGATAAAAATGAAAAGGATAATGGCATCATGAGAGGAGTTAAGAGAAAATGCTCAACCATGCGCATGGGATGTCAAGCGTCACTTACTGTGTCAAAGGATGTGAAACGAGATAGATGGGTTATAAAATCTTTTGATAATAATCACAATCATGTCATGGCTAGTCCTAAGAGTGTGTCTTATTTAAGGTGTCATAAAAAAATGAGTATTGCTGCAAAAAATCTTGTTGAGAAGTTTAATGAAGAAGGTTTACCTACTGGAAAAGTTGCTTCAATGTTTGATGGTAGTGGTTTAGCTTTTTCTAATAGAGATTGTTGGAATCATATGAAAAATGTTCGTTTGAAGAATTTGGATGTTGGAGATGCACAAGCTGTTTTTAATTATTGCAAGCACAAGCAAGCTCAAGATTCTGATTTTTTCTATTCAATACAAATTGATGATGATGCTAGAATGGTAAATTTCTTTTGGGTGGATGCTAGATCAAGGTTAGCTTACCAACATTTTGGAGATGTTATTACCTTTGACACTACATATAAAACCAACAAATATAGCATGCCATTTGCCCCGTTTACTGGGTTGAACCATCATTTTCAATCAATTTTATTTGGTTGTGCATTATTACAAGATGAATCTGAGGCATCTTTTATATGGTTATTTGAAACTTGGCTTGAGGCAATGAACAGGAAGATGCCGATATCTATAATAACAGATCAAGATTTAGCTATTGGAGCTGCTGTGGCCAAGGTATTTCCACAAACTCGTCATCGTCTATGTTTGTGGCACATTAGAAAGAAGTTTCCTGAAAAGCTTGCACATATATATCACAAAAAATCAATATTCAAGCGTGATCTGAAGAGGTGCATTCGAGAATCTCCAACCATTAAAGATTTTGAAGATGATTGGCAACGTATAATGGAGGTGTATAATTTGCAGGACAATGAATGGCTTCAAAGATTATTTGAAATTAGGGAATCATGGATACCGGTCTATAATCGAAGCACTTTTTTTGGTGGTATGAATACTACACAAAGAAGTGAGAGTATCAATTCATTTTTTGACTCATTTGTTGATGGAAGCACAACACTTCAAGACTTTGTGGTAAAGTATGAGAAGGCAATAAATAATCGGTATGAGGATGAAAAAAGAGAGGACTTTGAGTCTAGACACAAATTACGCATTTTGAGTATCGGCTCAAAAATTGAGGAGCATGCTGCATCAGTTTATACTAGGAATGTTTTTGGAAAGTTTCATAATGAGCTTGCAAGTGTTAGCCAGTTTACAAAGGAGAAGATTGAGAAAAATAGCTTACAATGTAAGTATCGAGTATCTAATTGTTTTAATGCTCGGGATACATTCATTGTTGATATAAATTTAGAGTCAAAGAATGCTAGATGTGGTTGTCAACTCTTTGAATTCATGGGAATACTCTGTAGGCACATTATGGTAATTTTTCAAGCTAAAAATATTATTCAAATTCCCAGTGAGTATATTTTGGAGCGTTGGACCAAGGAAGCCAATAGATATATTGAGGTTGGTGCTCTTGATATTCAGAATCGTGAATCGGATGTTTTGAGAAGTATGCATGTGCAACGTCAATTTGAAAAATTTGCTACTTTGGCCAAAAGATCAGAAGATGCATATAAGTTTATTGTAGGAGAACTTGATCGTGTTTATGAGATAGCCTCTACAATCAGAACAGAAATGTCAAATCTCAATGAAGCTCCTTTAGAGCCAAACAATCAGAATTTTATGTTTGACACAAATTATGATGATTCAAGTTTCAATATCAAGAATCCACATATATCACAGACAAAAGGTAGGAAAAGGAATTATTCTGACAAACTGCCTCTAGCAGGAAGATATAAAAGTGGTCTTGAATTGTCAATGAACAAGTCCTTAGTCAAAAGGAGAGCATGCAAATCTTGTGGAGAATATGGTCACTACCAATCAACTTGTAAACAGAAGCGAATGTAA 2262 0.3515 MDTDPFNFSHMDMQGDFIPDNIPVTHFDSLDDMPQSPVVDEPHVEPYVGMVFNSLEEVVGFYNSFAKAKGFGIRTRSSKKNYCILVCVREGERPVKSDKNEKDNGIMRGVKRKCSTMRMGCQASLTVSKDVKRDRWVIKSFDNNHNHVMASPKSVSYLRCHKKMSIAAKNLVEKFNEEGLPTGKVASMFDGSGLAFSNRDCWNHMKNVRLKNLDVGDAQAVFNYCKHKQAQDSDFFYSIQIDDDARMVNFFWVDARSRLAYQHFGDVITFDTTYKTNKYSMPFAPFTGLNHHFQSILFGCALLQDESEASFIWLFETWLEAMNRKMPISIITDQDLAIGAAVAKVFPQTRHRLCLWHIRKKFPEKLAHIYHKKSIFKRDLKRCIRESPTIKDFEDDWQRIMEVYNLQDNEWLQRLFEIRESWIPVYNRSTFFGGMNTTQRSESINSFFDSFVDGSTTLQDFVVKYEKAINNRYEDEKREDFESRHKLRILSIGSKIEEHAASVYTRNVFGKFHNELASVSQFTKEKIEKNSLQCKYRVSNCFNARDTFIVDINLESKNARCGCQLFEFMGILCRHIMVIFQAKNIIQIPSEYILERWTKEANRYIEVGALDIQNRESDVLRSMHVQRQFEKFATLAKRSEDAYKFIVGELDRVYEIASTIRTEMSNLNEAPLEPNNQNFMFDTNYDDSSFNIKNPHISQTKGRKRNYSDKLPLAGRYKSGLELSMNKSLVKRRACKSCGEYGHYQSTCKQKRM. 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03115 753 Pfam SWIM zinc finger 550 584 IPR007527 GO:0008270
Seca3g03115 753 SMART 26again6 559 586 IPR006564 GO:0008270
Seca3g03115 753 ProSiteProfiles Zinc finger CCHC-type profile. 735 750 IPR001878 GO:0003676|GO:0008270
Seca3g03115 753 Pfam MULE transposase domain 267 361 IPR018289 -
Seca3g03115 753 Pfam FAR1 DNA-binding domain 61 149 IPR004330 -
Seca3g03115 753 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 35 651 IPR031052 GO:0006355
Seca3g03115 753 ProSiteProfiles Zinc finger SWIM-type profile. 548 584 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03115 Seca-Chr3 56122055 56124316 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g03115 MULE 2.9e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03115 - - mtr:112420114 870.152