Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03110 ATGGCACTTTTGGGTCTTGTCTTGGTGGGACTTTTCTCTCTGGGATCACCTGTCTATGCGTCCACTGATGGTTGGATCAATGCCCATGCAACTTTCTATGGAGGGGGTGATGCCTCTGGCACAATGGGGGGAGCTTGTGGATATGGGAACTTGTATAGCCAGGGGTATGGGACTAACACAGCTGCTTTGAGCACGGCTTTGTTCAATAGTGGTTTAAGTTGTGGGGCTTGTTTTGAGATAAAGTGTGTTAATGACCAAAAGTGGTGTCTTCCAACCTCAGTTGTGGTCACTGCCACCAATTTCTGCCCACCAAACAATGCACTCCCTAATAATGCAGGTGGATGGTGCAACCCTCCCCTTCACCATTTTGATCTCTCTCAGCCTGTCTTCCAACAAATTGCTCAATACAAAGCTGGAATAGTACCCGTAGCTTACCGAAGGGTCCCTTGCCGAAAGAGAGGAGGTATCAGATTCACCATCAATGGTCATTCATACTTCAACCTAGTCCTAATTACAAACGTTGGTGGTGCTGGTGATGTTCATGCAGTTTCCATCAAAGGTTCAAGAACTAATTGGCAACAAATGTCCAGAAACTGGGGTCAGAACTGGCAGAGCAACTCTTACCTTAATGGACAGAGCCTCTCCTTCAAGGTTACCACTAGCGACGGACGCACCATGGTGTCTTACAATGTTGCACCTGCTGGCTGGTCCTTTGGCCAGACCTTCAATGGCCAACAATTTCCTTGA 747 0.4766 MALLGLVLVGLFSLGSPVYASTDGWINAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNSGLSCGACFEIKCVNDQKWCLPTSVVVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQPVFQQIAQYKAGIVPVAYRRVPCRKRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTNWQQMSRNWGQNWQSNSYLNGQSLSFKVTTSDGRTMVSYNVAPAGWSFGQTFNGQQFP. 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03110 248 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576
Seca3g03110 248 PRINTS Expansin/Lol pI family signature 138 154 IPR007118 GO:0005576
Seca3g03110 248 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576
Seca3g03110 248 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Seca3g03110 248 PRINTS Expansin/Lol pI family signature 42 60 IPR007118 GO:0005576
Seca3g03110 248 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Seca3g03110 248 PANTHER EXPANSIN-A15 10 247 IPR002963 GO:0009664
Seca3g03110 248 Gene3D - 155 247 IPR036749 -
Seca3g03110 248 PRINTS Expansin signature 55 69 IPR002963 GO:0009664
Seca3g03110 248 PRINTS Expansin signature 82 93 IPR002963 GO:0009664
Seca3g03110 248 PRINTS Expansin signature 94 104 IPR002963 GO:0009664
Seca3g03110 248 PRINTS Expansin signature 201 222 IPR002963 GO:0009664
Seca3g03110 248 PRINTS Expansin signature 230 246 IPR002963 GO:0009664
Seca3g03110 248 PRINTS Expansin signature 130 143 IPR002963 GO:0009664
Seca3g03110 248 PRINTS Expansin signature 154 166 IPR002963 GO:0009664
Seca3g03110 248 PRINTS Expansin signature 113 130 IPR002963 GO:0009664
Seca3g03110 248 PRINTS Expansin signature 166 187 IPR002963 GO:0009664
Seca3g03110 248 CDD DPBB_EXPA_N 24 150 - -
Seca3g03110 248 FunFam Expansin 155 247 - -
Seca3g03110 248 FunFam Expansin 15 151 - -
Seca3g03110 248 Pfam Lytic transglycolase 60 145 IPR009009 -
Seca3g03110 248 Pfam Expansin C-terminal domain 156 233 IPR007117 -
Seca3g03110 248 SUPERFAMILY Barwin-like endoglucanases 24 173 IPR036908 -
Seca3g03110 248 SMART dpbb_1 60 145 IPR007112 -
Seca3g03110 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 244 IPR007117 -
Seca3g03110 248 SUPERFAMILY PHL pollen allergen 152 243 IPR036749 -
Seca3g03110 248 Gene3D - 15 151 IPR036908 -
Seca3g03110 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 155 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03110 Seca-Chr3 56045150 56047716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03110 1 247 Expansin Gene Family AT2G03090 80.567 1.06e-152 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03110 - K20628 gmx:100802401 451.055