Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03109 ATGTATATATTCATTATAATTATTATTAATTTGTTAATATGTTTGTTTTATGTTGCTATTAGTCTTCCTGGTGACAATGGATTTGATTCTTTGGGGCTTGCTGAGGACCCAGAGAACGTGAAGTGGTTTGTTCAAGCAGAGCTTGTCAATGGGAGATTGACAATGTTGGCATTCTTGGGATTTATAGTTCAACACAATGTGACAGGAAAAAGACCATTTGATAACCTCTTGCAGCACCTCTCTGATCCATGGAACAACACCATCGTCCAAACACTAGGTGGCAACTAA 288 0.3785 MYIFIIIIINLLICLFYVAISLPGDNGFDSLGLAEDPENVKWFVQAELVNGRLTMLAFLGFIVQHNVTGKRPFDNLLQHLSDPWNNTIVQTLGGN. 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03109 95 Gene3D Chlorophyll a/b binding protein domain 17 93 - -
Seca3g03109 95 Pfam Chlorophyll A-B binding protein 21 75 IPR022796 -
Seca3g03109 95 SUPERFAMILY Chlorophyll a-b binding protein 16 92 - -
Seca3g03109 95 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 22 91 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03109 Seca-Chr3 56025300 56025826 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03109 23 95 Chloroplast and Mitochondria Gene Families AT5G01530 49.315 1.09e-17 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03109 K08910 - bvg:104894032 95.5153