Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03108 ATGGGAAGAGTTAAACTCAAGATAAAGAGATTAGAGAGCACAAGCAACCGGCATGTGACATATTCGAAGCGGAGAAGTGGAATATTGAAGAAAGCAAAGGAGTTATCAATATTATGTGATATTCAAATTGTCCTTCTTATATTTTCTCCCACAGGAAAACCTACATTACTACAAGGAGAGCGCAGTAATTTTGAGGATCTCATTGCAAAATTTGCTCAACTTAATCCTCAAGAAAGAACCAAAAGGAAATTGGAAAGCCTTGAAGCACTGAAGAAAACCTTCAAGAAGTTGGATCATGATGTACACATAAGAGATTTCTTAGGTTCAGGCAGTCAAACAGTGGAGGAATTGAGTCATCAAATGGGAGTTCTACAAGTTCAACTTTCTGAAGTACATCAGAGACTGAGTTATTGGATTGATCTAGAGAGGATCAATAATCTAGAACATCTTAGTCAATTGGAACATTCACTCCGGGAATCAATTAATCAAGTGCATCTACAGAAGGAAAATATCAGAAGATACCAAAGAATTTCACTTGAATGTGCTAGCCAGTTACAGGAAGGAATGGCTTTACCCGTGATGATGACTAGCCTGCAAGAGTCCCATCCCCTTTCTTGGATTTTGAGTAATGATAACCATCAGTTCATGATACCCAATGAACCAAAATTTCTGCCTTTTTGGTGGGTTAACTGCCATTATGCATTTTGCATTCTCAATTCTGAAGAGATTTGTGCTACTCTAGTGCTAACAGAAGTTAAATTGCATTATTTCCATGAAAACTGCACCTTTTTGTAG 795 0.3748 MGRVKLKIKRLESTSNRHVTYSKRRSGILKKAKELSILCDIQIVLLIFSPTGKPTLLQGERSNFEDLIAKFAQLNPQERTKRKLESLEALKKTFKKLDHDVHIRDFLGSGSQTVEELSHQMGVLQVQLSEVHQRLSYWIDLERINNLEHLSQLEHSLRESINQVHLQKENIRRYQRISLECASQLQEGMALPVMMTSLQESHPLSWILSNDNHQFMIPNEPKFLPFWWVNCHYAFCILNSEEICATLVLTEVKLHYFHENCTFL. 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03108 264 Coils Coil 77 97 - -
Seca3g03108 264 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Seca3g03108 264 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Seca3g03108 264 CDD MADS 2 54 - -
Seca3g03108 264 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca3g03108 264 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca3g03108 264 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca3g03108 264 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Seca3g03108 264 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 55 IPR002100 GO:0003677|GO:0046983
Seca3g03108 264 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca3g03108 264 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
Seca3g03108 264 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03108 Seca-Chr3 56019045 56025092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03108 1 231 Type I MADS-box Gene Family AT2G03060 51.667 1.02e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca3g03108 SRF-TF 5.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03108 - - pvu:PHAVU_003G189100g 368.622