Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03107 ATGCAGGAAACTAAGGACCCTGCAATTAAGCTCTTCGGCCAGAAGATTCCCTTTCCAGGGGAAGCAGAGGCTCCTGCCATTGCCAGTGAGGAAACTACCTCGCCTGCTGCCATGGATGTCGACAAAGAGGAAGAAAAAGAAGAAGAACAAGACAGAGACGTTGGTGAGTCAGATCCTGAAGATGAGAATGACCTAGGAGACAAGGATCCTCGAGCTGAAAAAGTTACTGAGACAACGAAAGAGGCTGATCCTCCTCCAAATGCTGCAGAGACTAAGAAGAATTCAGGTGAGGGTATTCAGAACCCAAAGACACCTTCCATAGATGAAGAAGCTGCAAAATCAGAGAACGAGCAAAGTGATGAAAACAACAACAACAACTCTCAAGAGAAACCACTGAAGAAGCCAGATAAAATACTCCCATGTCCACGCTGCAAAAGCATGGACACCAAGTTCTGTTACTACAACAACTACAACGTCAATCAGCCACGCTATTTCTGCAAAGCATGTCAAAGATACTGGACTGCAGGTGGTACTATGAGGAATGTTCCAGTTGGGGCAGGGAGAAGGAAGAACAAGAACTCTTCCTCACACTATCGCCACATCACCATCTCTGAGGCTCTTCAAGCAGCTAGAATTGGTGCTCCAAATGGAACTACTCATCTTCCCACTTTGAAGACTAATGGTAGAGTCCTCAGCTTTGGATTGGATCCACCAATCTGTGATTCCATGGCATCTGTCTTGAACCTTGGAGAGAAAAAGGCTCTTAATGGCACACAAAATGGGTTTCATACCATTGAGGAACAAAGAATCCCTGTTCCTTGCAAAAGTGGTGAAAATGGTGATGATTGCTCAAGTGTATCTACCATTACAGTTTCAAATTCCATGGAGGAAAATGGAAAAACCACGTCTCAAGAATCCTTACCACTACAGAATAATGGTTTCCTTCCTCAAGTTCCATGCATTTCTAGTGTTCCTTGGCCTTATCCTTGGGGTTCTGGAATTCCACCACCAACTGCTTTGTGTCCTCCTCCAGGATTTCCGATGTCATTCTACCCTGCTGCCTTTTGGAATTGTGGGGTACCAGCGAATTGGAATGTTCCATGGTTCTCCCCTCACCCCTCTGCTCCAACCCCAAGGTCTCCAAGCTCTGGTCCAAATTCACCAACACTTGGGAAGCATTCAAGGGATGATGACATGGCTAAACAAGACCATTTGCAGAAAGAAGAACCACCAAGACAGAAAAACGGTTGTGTTTTGGTCCCCAAAACTCTAAGAATTGATGATCCGAGTGAAGCTGCAAAGAGTTCTATATGGGCAACTCTTGGAATTAAGAATGAGTGTGTGAAAGGGGGAAGTATGTTTAAGGCCTTCCAATCAAAGAAGGGAGAGAAGAATCATGTTGTTGAAACATCTCCAGTGTTGAGGGCAAACCCTGCAGCTTTGTCTAGATCCCTTAATTTTCATGAGAACTCTTGA 1476 0.4492 MQETKDPAIKLFGQKIPFPGEAEAPAIASEETTSPAAMDVDKEEEKEEEQDRDVGESDPEDENDLGDKDPRAEKVTETTKEADPPPNAAETKKNSGEGIQNPKTPSIDEEAAKSENEQSDENNNNNSQEKPLKKPDKILPCPRCKSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSSSHYRHITISEALQAARIGAPNGTTHLPTLKTNGRVLSFGLDPPICDSMASVLNLGEKKALNGTQNGFHTIEEQRIPVPCKSGENGDDCSSVSTITVSNSMEENGKTTSQESLPLQNNGFLPQVPCISSVPWPYPWGSGIPPPTALCPPPGFPMSFYPAAFWNCGVPANWNVPWFSPHPSAPTPRSPSSGPNSPTLGKHSRDDDMAKQDHLQKEEPPRQKNGCVLVPKTLRIDDPSEAAKSSIWATLGIKNECVKGGSMFKAFQSKKGEKNHVVETSPVLRANPAALSRSLNFHENS. 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03107 491 ProSiteProfiles Zinc finger Dof-type profile. 139 193 IPR003851 GO:0003677|GO:0006355
Seca3g03107 491 ProSitePatterns Zinc finger Dof-type signature. 141 177 IPR003851 GO:0003677|GO:0006355
Seca3g03107 491 MobiDBLite consensus disorder prediction 1 139 - -
Seca3g03107 491 MobiDBLite consensus disorder prediction 391 411 - -
Seca3g03107 491 MobiDBLite consensus disorder prediction 373 417 - -
Seca3g03107 491 PANTHER CYCLIC DOF FACTOR 2 1 491 IPR045174 GO:0003700|GO:0006355
Seca3g03107 491 MobiDBLite consensus disorder prediction 42 63 - -
Seca3g03107 491 MobiDBLite consensus disorder prediction 64 80 - -
Seca3g03107 491 Pfam Dof domain, zinc finger 136 193 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03107 Seca-Chr3 55996208 55998819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03107 1 489 C2C2-Dof Transcription Factor Family AT3G47500 49.105 1.67e-126 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca3g03107 zf-Dof 3.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03107 - - gsj:114409713 688.337