Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03101 ATGGGGGAAGACATGGTTTTGTCTGTTGACCCACTTCCTATGGCACCGGCAAGTTTGCAACATGGTGAGGCCCGAGGATCACTCAGTGAGAGTGCTGCTACTCATGTCAATGAAGTTGGGGAATGTGATACACTGAAAGAAGAAAAGAAGGAAGAAGAAGAAGACCCTATCCAGATGGTAGAATGTCGCATTTGCCAGGAGGATGATACCCTTCAAAATTTGGACATACCCTGTGCTTGCAGAGGAACCTTGAAGTTTGCTCACACCAAATGTGTTCAACTATGGTGCTACGAGAAGGGTGATACAATTTGTGAGATCTGCCATCAGCCGTTCAGACGTGGTTATACTGCTACATCACCTTTCTACCATCCTGAAGATACTTCAATTGATATCAGGGAGGACTGGGCAACCTCAAGTGATCATTTAGATTTGCATGATCCTCGACTTTTTGCTATTGCAGCTGTTGAGCACCGAATGCTAGAGGCTGAGCATGAAGATTATGTCCGTACTGGCATAAGTGGAACTACAATGTGTCGGTCTGCTGCTCTAATTTTGATGGCTCTTTTATTTCTGAGGCATGCTGCTGCCCTCTTCAATGCTGATGTGGAGAAAGCTTTAATCTATTTTTCTTTTTTCTTCCTTTGGGCTGCTGCTGTTGTCCTTCCCTGCTATTTTTTTGCCTGGATCATTCGCGTAATTCAGCATCAAAGGCAAAGACAAGTTACTACCCCATGCTTATTCTATTGTTGA 750 0.4427 MGEDMVLSVDPLPMAPASLQHGEARGSLSESAATHVNEVGECDTLKEEKKEEEEDPIQMVECRICQEDDTLQNLDIPCACRGTLKFAHTKCVQLWCYEKGDTICEICHQPFRRGYTATSPFYHPEDTSIDIREDWATSSDHLDLHDPRLFAIAAVEHRMLEAEHEDYVRTGISGTTMCRSAALILMALLFLRHAAALFNADVEKALIYFSFFFLWAAAVVLPCYFFAWIIRVIQHQRQRQVTTPCLFYC. 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03101 249 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 240 IPR033275 -
Seca3g03101 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 119 IPR013083 -
Seca3g03101 249 ProSiteProfiles Zinc finger RING-CH-type profile. 54 114 IPR011016 GO:0008270
Seca3g03101 249 MobiDBLite consensus disorder prediction 1 33 - -
Seca3g03101 249 CDD RING_CH-C4HC3_MARCH 62 108 - -
Seca3g03101 249 SUPERFAMILY RING/U-box 58 112 - -
Seca3g03101 249 Pfam RING-variant domain 62 107 IPR011016 GO:0008270
Seca3g03101 249 Pfam Protein of unknown function (DUF3675) 114 230 IPR022143 -
Seca3g03101 249 SMART ringv_2 61 108 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03101 Seca-Chr3 55883715 55891942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03101 61 113 C3H Transcription Factor Family AT2G37950 35.714 8.76e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03101 - - gmx:100795900 327.405