LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca3g03097	ATGGGGAGACCACCTTGCTGTGACAAAATTGGGATTAAGAAAGGGCCTTGGACTCCAGAGGAAGACATCATCTTGGTCTCTTACATTCAAGAACATGGACCAGGCAATTGGAGATCAGTTCCCACCAGTACAGGTTTGATGAGATGCAGTAAAAGCTGCAGGCTTAGATGGACTAACTATCTTCGCCCAGGCATCAAACGAGGCAATTTCACTGATCATGAAGAAAAAATGATAATCCACCTCCAAGCTCTTTTGGGCAACAGATGGGCTGCTATAGCATCCTATCTTCCACAGAGAACAGACAATGACATAAAAAACTACTGGAACACCCATTTAAAGAAAAAGCTGAAGAAGATGCAAAATGGGGATGAGGATGGTGATCACAAAGAAGGACACTCTAATTCACAGGCAAAAGGTCAGTGGGAGAGAAGGCTTCAAACAGATATACACATGGCCAAACAAGCCTTGTGTGAGGCACTGTCCCTTGACAAACCCACCCCAGAGACTAACACCTTTGATTACCATCACCCTGTTACCAACAACACCACAACACCAAACCAAGCTTCCCCATATGCATCAAGTGCAGAAAACATAGCCCGATTGCTCGAAAACTGGATGAAGAAACCCCAGAATTACTCATCAACTGAGACAAATTCAGGAAATTCCTTCAGCAACATGGTGACCACAGGATCCAGTTCTAGTGAAGGAACACAGAGCACCATCACATGCACACCAGAACAAGCTTTTGATTCTCTGTTGAGTTTCAACTCTGATCGTTCTCAATCTGAAGAAAACACCAACTTTACTGCCACTGGCCCCTTCCAAGATGAAAGCAAGCCACTAAACCAGGAGCCACAAGTCCCTCTCATGTTGCTGGAGAATTGGCTGTTTGATGATGGAGCAGCTCAATGCAATGAAGATCTAATAAACATGTCATTGGAGGAAAGTACAACAGGGTTGTTTTAG	966	0.4431	MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTSTGLMRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKMQNGDEDGDHKEGHSNSQAKGQWERRLQTDIHMAKQALCEALSLDKPTPETNTFDYHHPVTNNTTTPNQASPYASSAENIARLLENWMKKPQNYSSTETNSGNSFSNMVTTGSSSSEGTQSTITCTPEQAFDSLLSFNSDRSQSEENTNFTATGPFQDESKPLNQEPQVPLMLLENWLFDDGAAQCNEDLINMSLEESTTGLF.	322

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca3g03097	321	FunFam	Transcription factor MYB30	68	126	-	-
	Seca3g03097	321	CDD	SANT	69	112	IPR001005	-
	Seca3g03097	321	Gene3D	-	13	66	-	-
	Seca3g03097	321	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	65	IPR017930	-
	Seca3g03097	321	CDD	SANT	16	61	IPR001005	-
	Seca3g03097	321	SMART	sant	13	63	IPR001005	-
	Seca3g03097	321	SMART	sant	66	114	IPR001005	-
	Seca3g03097	321	ProSiteProfiles	Myb-like domain profile.	62	112	IPR001005	-
	Seca3g03097	321	FunFam	MYB-related transcription factor	13	66	-	-
	Seca3g03097	321	PANTHER	MYB FAMILY TRANSCRIPTION FACTOR	1	235	-	-
	Seca3g03097	321	Pfam	Myb-like DNA-binding domain	67	112	IPR001005	-
	Seca3g03097	321	Pfam	Myb-like DNA-binding domain	14	61	IPR001005	-
	Seca3g03097	321	MobiDBLite	consensus disorder prediction	210	240	-	-
	Seca3g03097	321	Gene3D	-	68	143	-	-
	Seca3g03097	321	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	66	116	IPR017930	-
	Seca3g03097	321	MobiDBLite	consensus disorder prediction	258	281	-	-
	Seca3g03097	321	ProSiteProfiles	Myb-like domain profile.	9	61	IPR001005	-
	Seca3g03097	321	SUPERFAMILY	Homeodomain-like	11	108	IPR009057	-
	Seca3g03097	321	MobiDBLite	consensus disorder prediction	118	141	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca3g03097	Seca-Chr3	55754863	55756558	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca3g03097	1	321	MYB Transcription Factor Family	AT5G62470	51.213	1.75e-109	320

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Seca3g03097		Myb_DNA-binding	1.2e-14	CL0123