Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03088 ATGGAAGGAGGTGATGATTTCCACCACCACCATCACCACCACCACCGACAAAACTTCCCATTCCAACTACTCGAGAATAAAAAAGAAGACCAAGAAAGCGCTTCCTGTTCCACCTCATCCTCCTCCCCATACCCATCCTTAGCCATCTCCGCTGAACCAACAACTTCCAACTCAAGCCGATCTAACAACCAACAACTCGTAACAACCGCCGAACCTTCCAACAAAAAACCACCTCCAAAACGAACCTCCACAAAAGACCGCCACACGAAGGTCGACGGCCGCGGCCGCCGCATTCGAATGCCGGCTCTATGCGCCGCCAGAGTCTTCCAACTCACGCGCGAGCTCGGACACAAATCCGACGGCGAAACCATCGAGTGGCTCCTCCAACAAGCCGAACCCGCCGTCATCGCCGCCACCGGCACCGGCACAATCCCAGCCAACTTCACATCCCTCAACATCTCCTTACGAAGCTCAGGCTCCTCCATGTCGGTTCCATCTCAGCTTCGATCTTCATACTTCAACCCTAACTTCTCTCTTCCACAACGAAGAACCACTTTATTCTCCGACACCACCAACACTTCCTCCGCCACCGCGACGCTTCTCAATTTCCAATCCAATAACAACTTAATCAACACTGGTATGTTTCAAGCTAAGCATGAATTGCGTGAAGGTAGCAACACGGCCAACACGACGTCGTTAGATAAACGAAGACCTGAGCAAGAGGAGCAGCATCAAGTTGGGAGCTATTTGTTGCAGTCAAGTAGTGCAGGGGCAATTCCGGCAAGTCATGCTCAAATTCCAGCTAATATATGGATGTTAGCGAATTCTAATAACCAACAACAAGGAGGTATGACTATGAGTGGTGAGGCTTCTGCTTTGTGGATGAATAACAGTGCTTTGTATAGAAGCACTGTGTCAAGTGGATTGCATTTCATGAACTTCCCAACCCCTATGGCGTTGTTGCCAGGTCAGCAATTAGCGTCTTCTGGAATTGGTGCTGGAAATATAAACATAAATGAAGGACATTTGAGTATGCTTGCTGGGTTAAACCCTTATCGGCAGGTCATTGGAGTTTCGGAGTCTCAGGCGAGTGGATCACATTCACATAATCATGGTGGAAGTGAGGATCGACATGATAACACCAGTCACCATAACACATAA 1161 0.4901 MEGGDDFHHHHHHHHRQNFPFQLLENKKEDQESASCSTSSSSPYPSLAISAEPTTSNSSRSNNQQLVTTAEPSNKKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSSYFNPNFSLPQRRTTLFSDTTNTSSATATLLNFQSNNNLINTGMFQAKHELREGSNTANTTSLDKRRPEQEEQHQVGSYLLQSSSAGAIPASHAQIPANIWMLANSNNQQQGGMTMSGEASALWMNNSALYRSTVSSGLHFMNFPTPMALLPGQQLASSGIGAGNININEGHLSMLAGLNPYRQVIGVSESQASGSHSHNHGGSEDRHDNTSHHNT. 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03088 386 MobiDBLite consensus disorder prediction 361 386 - -
Seca3g03088 386 MobiDBLite consensus disorder prediction 220 246 - -
Seca3g03088 386 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 31 374 IPR005333 GO:0003700
Seca3g03088 386 MobiDBLite consensus disorder prediction 1 97 - -
Seca3g03088 386 Pfam TCP family transcription factor 82 243 IPR017887 -
Seca3g03088 386 ProSiteProfiles TCP domain profile. 84 138 IPR017887 -
Seca3g03088 386 MobiDBLite consensus disorder prediction 18 32 - -
Seca3g03088 386 MobiDBLite consensus disorder prediction 370 386 - -
Seca3g03088 386 MobiDBLite consensus disorder prediction 78 97 - -
Seca3g03088 386 MobiDBLite consensus disorder prediction 33 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03088 Seca-Chr3 55475790 55476950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03088 13 384 TCP Transcription Factor Family AT1G69690 41.960 2.98e-60 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Seca3g03088 TCP 1.8e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03088 - - gmx:100809154 459.529