Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03082 ATGGATTCTGTGAAGATTTTCAAAGGTTATGGCAAAGTGGAAGACAAACAGAACCACCTCGAAGATCAACAACACCACCACCGAAAAACCTCCAAGGCCCTCATCGCCACCGTTTCCATCTTCGCTATCCTCTCTCTCACTATCGCCTTGGCTTTCGCCCTCGCAGCCCTCGTCCACCACACCGACAACGAGCCACCCGAACAACAACAACAATCCCTCAACTCGGCCGAGTCCATCCGAGCCGTCTGCAACGTGACTCACTTCCCTGACTCGTGCTTCGCCGCCGTATCCTCCTCCGCCCAAAACCCCACCGATCCCGAAGCCATCCTCAGCCTCTCTCTCCGCGCCTCCATCGATGAGCTCACCAGGCTCGCCTCTTCGCTCGGAGCCAAAGCCTCTAATTCCAAGGGGTCCGCACTGGCTGACTGCAAGGACCAGATAGACGACGCGCTGAGTCAACTCAACGACTCGCTGTCGGCGATGACGGTGGTTCCCGGCGGCGGCGTAACGCTGACGGATAGAAAGATCAGCGACATCCAGACGTGGGTGAGCGCGGCTATGACGAACCAACAGACTTGCGTTGATGGATTGGAAGAGGCTGGATCTGTGGCTGCTGTTGCTGAAGTGAAGAGCATGATGAAGAGATCGAGCGAGTACGTTAGCAACAGCTTGGCCATTGTTGCTAATATACGCACTTTGTTACAACAACTCCATATGCCACTCCATTGA 729 0.5528 MDSVKIFKGYGKVEDKQNHLEDQQHHHRKTSKALIATVSIFAILSLTIALAFALAALVHHTDNEPPEQQQQSLNSAESIRAVCNVTHFPDSCFAAVSSSAQNPTDPEAILSLSLRASIDELTRLASSLGAKASNSKGSALADCKDQIDDALSQLNDSLSAMTVVPGGGVTLTDRKISDIQTWVSAAMTNQQTCVDGLEEAGSVAAVAEVKSMMKRSSEYVSNSLAIVANIRTLLQQLHMPLH. 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03082 242 SMART PMEI_2 74 226 IPR006501 GO:0004857
Seca3g03082 242 CDD PMEI-like_3 81 232 - -
Seca3g03082 242 PANTHER PECTINESTERASE 48 228 - -
Seca3g03082 242 FunFam Pectinesterase 75 231 - -
Seca3g03082 242 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 78 230 IPR035513 -
Seca3g03082 242 Gene3D Invertase/pectin methylesterase inhibitor family protein 73 231 IPR035513 -
Seca3g03082 242 NCBIfam pectinesterase inhibitor domain 45 229 IPR006501 GO:0004857
Seca3g03082 242 Pfam Plant invertase/pectin methylesterase inhibitor 78 226 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03082 Seca-Chr3 55417305 55418033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03082 1 242 Carbohydrate Esterase AT1G53840 37.795 2.45e-38 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03082 - - aprc:113852848 254.988