Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03081 ATGTCTGGCCAGAGAAGCTCCAGTGCTTTAAATTTTACAGAGAGTGAAATTAATGATCTGGTGTTGAGGTTACAAGCACTGCTGCCACAACTCAGCCAAACAAGAAAATCAAGGGCATCATTGACAGAGATCTTGAAGGAAACTTGTTCTCACATCAATAGGCTACAGAAAGAGGTGGAAGACCTTGGTGAAAGGCTAGCAGAGCTGATGGATTCTGTAGGCATTAGTGATATTGACGAGGAGCATCTTAGAAGGCTTTTGCAATAA 267 0.4232 MSGQRSSSALNFTESEINDLVLRLQALLPQLSQTRKSRASLTEILKETCSHINRLQKEVEDLGERLAELMDSVGISDIDEEHLRRLLQ. 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03081 88 Gene3D - 14 85 IPR036638 GO:0046983
Seca3g03081 88 PANTHER DNA BINDING PROTEIN 1 88 IPR044172 -
Seca3g03081 88 Pfam Helix-loop-helix DNA-binding domain 16 56 IPR011598 GO:0046983
Seca3g03081 88 Coils Coil 45 72 - -
Seca3g03081 88 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 16 71 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03081 Seca-Chr3 55414634 55415764 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03081 2 73 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 47.945 1.41e-16 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca3g03081 HLH 0.00027 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03081 - - gmx:100810266 123.25