Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03078 ATGGGAAATTGCATCAGAGCTCGTTCCAAGGTTGATAACTCTATGAACTCTCACCCCACTTTTGCAGATGCTACAAAAGTTCTTGGTAGAAGCATCCATTCCTTGGTTCATTCAAGTCCAAAAATGCATGGATACCATTATGATGGTAAACTTAAGACTCTCCCAACTCCAAAATCTGAAGGTGACATACTTTCCTCCCCATATTTAAAATCCTTCACATTCAATGATCTGAAGAACGCCACAAGAAACTTTCATCCTGATAGTCTAATAGGACAAGGGGGATTTGGTCATGTCTATAAGGGGTGGATTAATGAGCAATCCCTTGAGGCTGCAAGACCTGGATCTGGAATGATTGTAGCTGTAAAGAAGCTTAAACCTGAAGGTTTTCAAGGCCATAAGGAATGGCTGTCTGAACTCAATTATCTTGGCCAACTTCATCATCCAAATCTTGTAAAGCTCTTTGGATACTGCTTGGATGGGGATAGTAGACTTCTAGTCTACGAGTACATGCCCAAAGGCAACTTGGAGAATAATCTATTTTGCATTACAGGGGGCGTACGTTCGCTTCCTTGGGCAACAAGGATCAAAGTTGCTATTGGTGCTGCTCAAGGTCTCACCTTCTTACATGACTCTGAGCAACCAGTTATCTATCGTGATTTCAAGCCTTCCAATATTTTATTAGATTTGGAATTCAATGCAAAACTATCAGACTTTGGTTTGGCCAAAGCAGGGCCCACTGGTGACCTTACTCATGTTTCTACTCAAGTCCTAGGTACTGAAGGCTATGCAGCTCCGGAATATATTGCTACAGGTCATTTGACTACAAAGTGTGATGTCTATAGCTTTGGAGTTGTGCTATTGGAACTACTATCAGGGCATCGTGCTATTGATAGAACAAAACTTGGAGTCGAACAAAATTTGGTAGATTGGGCAAGACCCTATTTGGGTGATAGGAGGAAGTTGTTCAGGATTATGGATACCAAGTTGGAAGGGCAGTACCCTCAAAGGGCAGCTTACACAGTTGCAATTCTTGCATTACAATGTACTAGCGAGGTCAAAATTAGACCACGAATGTCTGAGGTTTTGGCTACTTTGGAACATGTTCCATCTATGAGATATTCAATTTCAGCCAGTCCACATAGGAAGTCCATTTCAAGCCCGAATTCAAAATCTCCATTGACACATAATCGTCATCATTCAGTAGACAGGAAATCTTTGTCTGGTTATGTTAGTGATATCTCTACTAGGTCCCCTATGACATCCCCATATATGCAATCCCCCAAAGGTGCATTTGCTCATCAAGTGTAG 1308 0.4167 MGNCIRARSKVDNSMNSHPTFADATKVLGRSIHSLVHSSPKMHGYHYDGKLKTLPTPKSEGDILSSPYLKSFTFNDLKNATRNFHPDSLIGQGGFGHVYKGWINEQSLEAARPGSGMIVAVKKLKPEGFQGHKEWLSELNYLGQLHHPNLVKLFGYCLDGDSRLLVYEYMPKGNLENNLFCITGGVRSLPWATRIKVAIGAAQGLTFLHDSEQPVIYRDFKPSNILLDLEFNAKLSDFGLAKAGPTGDLTHVSTQVLGTEGYAAPEYIATGHLTTKCDVYSFGVVLLELLSGHRAIDRTKLGVEQNLVDWARPYLGDRRKLFRIMDTKLEGQYPQRAAYTVAILALQCTSEVKIRPRMSEVLATLEHVPSMRYSISASPHRKSISSPNSKSPLTHNRHHSVDRKSLSGYVSDISTRSPMTSPYMQSPKGAFAHQV. 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03078 435 ProSitePatterns Protein kinases ATP-binding region signature. 90 123 IPR017441 GO:0005524
Seca3g03078 435 Gene3D Phosphorylase Kinase; domain 1 56 169 - -
Seca3g03078 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Seca3g03078 435 Gene3D Transferase(Phosphotransferase) domain 1 170 382 - -
Seca3g03078 435 SUPERFAMILY Protein kinase-like (PK-like) 68 390 IPR011009 -
Seca3g03078 435 ProSiteProfiles Protein kinase domain profile. 84 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g03078 435 Pfam Protein kinase domain 85 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g03078 435 PANTHER OS01G0588500 PROTEIN-RELATED 44 368 - -
Seca3g03078 435 CDD STKc_IRAK 90 366 - -
Seca3g03078 435 FunFam Serine/threonine-protein kinase BIK1 52 169 - -
Seca3g03078 435 MobiDBLite consensus disorder prediction 376 412 - -
Seca3g03078 435 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 170 378 - -
Seca3g03078 435 MobiDBLite consensus disorder prediction 376 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03078 Seca-Chr3 55285530 55291999 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03078 70 421 Glycoside Hydrolase AT3G07070 47.354 1.34e-105 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca3g03078 Pkinase 5.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03078 - - gmx:100791844 565.844