Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03075 ATGAGCACCACTCTCACCGGTTTGGCGCTCGTGTTTCAACAATACACCGCTCTATTGAAAAAGAACGTCTTGCTCTCATGGCGGAGCAAGAGGGCCACACTTCTCCAACTCCTCTCCCCACTCTTTTTCATCTTCCTCATTTTCGCCATCGACAAGGCAATCAAGGCTCAAACCTCCACCTCCACCGAATACAAGAGCGTAACTGACCCTCCCTTTCAACCCCCTCCTTCCATCCCTCCCTGTGAGGACAAGTTCTTCATCAAACTTCCCTGTTACGACTTCGTTTGGAGCGGTGACCAAAACCCCAAGTTTCAAACCATCGTTAATCGCATCATGAACAACAACCCTGGAAGGCCCATTCCTCCTTCTAAGGTCAAATCCTTTAAGGATAAAACCGAAGTGGATGCGTGGCTCTTCGGTAACCCTATGCATTGTCCAGGGGCGCTTCATTTCGCGGATAAGAATAACACCGTTATCAGCTATGGCTTACAAACAAACTCAACTGTGGTTCAAAAACGAGGCAAATATCAAGATCCTACTACTTTTCAACTCCCTCTTCAGCTCGCTGCAGAGCGTGAAATCGCTAGATACCTTATTGGAGACCCAAACTTCAGCTGGAATGTGTTTTTGAAGGAGTTTGCGCACCCTGCTAGGAGCCCTTTCTCTGCTGTGGGTTCAATAGGTCCAGCATTTTTCCTTGCAATTGCCATGTTTAATTTTGTTCTTCAGATGAGTTCTTTGGTGACAGAGAAAGAGCTTAAGCTTCGTCAGGCAATGAACGTGATGGGTCTCTATGACTCTGCTTACTGGTTATCCTGGCTCACTTGGGAGGCTGTTGTTACGCTCCTTTCATCCCTTCTCATAGTTCTCTTTGGAATGATGTTTCAGTTTCGTTTTTTCTTGAAAAACAATTTCTTCGTCATATTCGTTTTGTTCTTCCTATTTGAACTCAATATGACCGGCTTGGCCTTCATGCTATCTGCTTTCATTCAGAAATCTTCTTCCGCCACAACAGTGGGTTTCTCCATATTTATTGTGGGCTTTGTGACTCAGCTAGTGGTACAAGCAGGATTTCCTTACACAGATAGCATCTCCAGTACTTTCCGAAATATCTGGTCATTGTTCCCTCCTAACCCTTTTGCTCAGGCTCTGAAAGTGCTTTCAGATGCAGTTGCAACATCTGAAGATGACGGTCTTAGCTGGAGCAAACGGGGAGAATGCGCTCCTAATGATGAAGACTGTGTGATAACCATTAATGATATTTATAGTTGGCTTCTGGCTACGTTCTTTATATGGTTTATTCTGGCCATCTACTTCGACAATATAATCCCAAATGCATCGGGTGTAAGGAAATCCATGTTATACTTCCTAAGTCCCGGTTATTGGACGGGAAAAGGAGGACAAAAAGTGAAAGAGGGTGGGGTTTGTAGTTGCTTTGTTTCAGTCCCACATGAAGAGCATAGTACACCAGATGATGAAGATGTCCTTGAAGAAGAGAACACTGTGAAACAGCAACAAACACAAGGTGTGGTTGACGCAAATGTTGCTGTTCAGATACATGGCATTGTGAAGACATATCCTGGTGCATTTAACATTGGTTGCTGCTGTAAATGTAAAAGAAGTTCTCCTTACAATGCTGTCAAGGGTTTGTGGGTAAACTTTGCAAAGGATCAGCTATTTTGTCTTTTAGGACCCAACGGAGCTGGAAAAACTACAGCTATTAATTGTTTGACTGGGATAACTCCAGTAACTGATGGAGATGCATTGATTTACGGACATTCCATCCGAAGCTCCACTGGCATGTCAAGCATTCGAAAGCTTATAGGAGTATGTCCCCAGTTTGATATCCTATGGGATGCACTGTCTGGTGAAGAACACCTCGAACTCTTTGCTAGTATTAAAGGCCTTTCCCCAACTTCCATAAAATCAATTACCCAGACATCATTGGCAGAGGTGAGACTCACAGATTCCGTCAAAGTGAGAGCTGGAAGTTACAGTGGAGGAATGAAACGTCGTCTTAGTGTTGCAATTGCCCTTATTGGTGACCCTAAATTGGTCATTTTGGATGAACCGACTACTGGTATGGATCCAATCACAAGGAGGCATGTGTGGGACATAATTGAAAATGCAAAAAAAGGGCGTGCCATTGTTCTTACAACACACTCTATGGAAGAAGCTGACATTCTAAGTGACCGCATAGGAATCATGGCAAAGGGAAAGCTCCGTTGCATTGGCACCTCAATCAGATTGAAGTCACGCTTTGGTACTGGTTTTATTGCTAATATAAGCTTCTATGGAAACAATAGTGAACACAGTCCTGACAATGGAGATGCAATAATATCAGCAGAACATCGTGAGGCAGTGAAGCAACTCTTTAAGAATCGATTAGATGTAGTGCCAAAAGAGGAGAACAATAGCTTCCTAACTTTTGTGATTCCTCATGACAGAGAGTCGCTCTTGTCGGTAAGCTTTCCTTTCTGGGCTTCATTTCCAATTCCTTTAGATCTTCTCTAA 2514 0.4364 MSTTLTGLALVFQQYTALLKKNVLLSWRSKRATLLQLLSPLFFIFLIFAIDKAIKAQTSTSTEYKSVTDPPFQPPPSIPPCEDKFFIKLPCYDFVWSGDQNPKFQTIVNRIMNNNPGRPIPPSKVKSFKDKTEVDAWLFGNPMHCPGALHFADKNNTVISYGLQTNSTVVQKRGKYQDPTTFQLPLQLAAEREIARYLIGDPNFSWNVFLKEFAHPARSPFSAVGSIGPAFFLAIAMFNFVLQMSSLVTEKELKLRQAMNVMGLYDSAYWLSWLTWEAVVTLLSSLLIVLFGMMFQFRFFLKNNFFVIFVLFFLFELNMTGLAFMLSAFIQKSSSATTVGFSIFIVGFVTQLVVQAGFPYTDSISSTFRNIWSLFPPNPFAQALKVLSDAVATSEDDGLSWSKRGECAPNDEDCVITINDIYSWLLATFFIWFILAIYFDNIIPNASGVRKSMLYFLSPGYWTGKGGQKVKEGGVCSCFVSVPHEEHSTPDDEDVLEEENTVKQQQTQGVVDANVAVQIHGIVKTYPGAFNIGCCCKCKRSSPYNAVKGLWVNFAKDQLFCLLGPNGAGKTTAINCLTGITPVTDGDALIYGHSIRSSTGMSSIRKLIGVCPQFDILWDALSGEEHLELFASIKGLSPTSIKSITQTSLAEVRLTDSVKVRAGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIENAKKGRAIVLTTHSMEEADILSDRIGIMAKGKLRCIGTSIRLKSRFGTGFIANISFYGNNSEHSPDNGDAIISAEHREAVKQLFKNRLDVVPKEENNSFLTFVIPHDRESLLSVSFPFWASFPIPLDLL. 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03075 837 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 543 745 IPR027417 -
Seca3g03075 837 SMART AAA_5 556 740 IPR003593 GO:0016887
Seca3g03075 837 ProSitePatterns ABC transporters family signature. 665 679 IPR017871 GO:0005524|GO:0016887
Seca3g03075 837 Pfam ABC-2 family transporter protein 32 438 IPR013525 GO:0016020|GO:0140359
Seca3g03075 837 CDD ABC_subfamily_A 517 751 - -
Seca3g03075 837 Pfam ABC transporter 550 692 IPR003439 GO:0005524
Seca3g03075 837 FunFam ABC transporter A family member 2 507 771 - -
Seca3g03075 837 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 517 763 IPR003439 GO:0005524
Seca3g03075 837 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 492 815 IPR026082 GO:0016020|GO:0055085|GO:0140359
Seca3g03075 837 Gene3D - 512 763 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03075 Seca-Chr3 55185828 55190578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03075 560 762 Calmodulin-binding Proteins AT2G36910 23.333 1.13e-09 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03075 - - lja:Lj0g3v0033249.1 1415.59