Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca3g03073 | ATGGGAAAATCACCAGGAAAATGGATCAAAACTGTACTATTTGGGAAAAAGTCATCCAAATCAAATATTTCAAAAGGAAGAGAGAAGCTTGTTAATAAAAAGGAAGCAGTGTTTGCTTCTAATGTGTCGGATAATGGTTTGGCTTTAGAGCCAACCCTTGATAAGATTGCCAGACATGAGGAGGACCTAGAACAGGAGAATAAAGAATCAGAAAACCTTTTACCTGGGAATCAAGAAGTAGACAACATTGGATCTGTTGACCAAGATGCACCACCTGATCCGGAGAAAATCAGGCTGGAAGAAGCAGCAACAAAAGCACAGGCTGCTTTCAGGGGTTACTTGGCTCGCAGGGCATTTAGGGCTCTAAAAGGCATAATAAGGTTGCAAGCACTTATCCGTGGGCATTTGGTTAGGAGACAAGCTGTTGCTACATTATGCTGTATGTATGTGATTGTAAGGTTACAGGCACTTGTTCGTGGAGGGAGCGTTAGACAGTCCAATATTGGATTTGAAATCCATAAGAAGTGCAATCTATTTAAGCCTTTGGATTGCAAACTTGGTGAGTCAGTTCGCATTTCCACAAAAATTTCGAAACTGTCAGGAAATACTTTCATCTGTAAGCTTCTTTCTTCATCAACTACAATAATGGCCCTGCACCTGCAATATGTTGGTGGGGATCCAAATTCAGTCTTAAGTTGGTTGGAGCGCTGGTCAGCATCGTACTTTTGGAAACCAGTTCCCCAACCCAAGAAAATTCGAGACTCTAAATCTCAGAGAAAGCAGGGTAATATTTCAATCGGAGAAGTTCAAATTAGCAAGTCAAAACGTACCAACAGGAAGCTTCCGATTGCAAATTTCGAATCAGTCCCAGTGCAAACAAATCCTGAACTTGAGAAACCAAAACGTAATTTCAGGAAAATCAGCCAACCGTCAGATCCAGAGCAGGAAAATCCACAGAGTGAGCTTGAAAAGGTTAAACGTAACTTGAGAAAGATTCATAACCCTGTTGTTGAGAATGTTATTCTGTCAGAAGTTGAATGTGAGACCCCGAAGCCGCATTTGGAAAAGGCAACAGTTATTGCAGATGATGCTGTTTCAGAACCGGTTGTCAATACAACTAATGAAAAGATCAAGAAGGAAGCTACATTGATCATCTCCAATGTACCTGATGTAGAAATTACTCCAAGACCGTCAGATAACAAGGAGGTGTCTGATATTCCAAGCAGTGATCAAATGCCTATAGAATCAATGCCCTTGACAGAGACTACAACTAAAGAGAAAAACACTTCTGGTGACATAGTTAAAAATGAGCCAATCAATCTACCAGAGACTATCTTTAAAGATGAAAACTCTCCATTAACAAATGGAGATTTGACTCATAAGGAAGGTCTAACAGGTAATGAAAACCAGAAATCTACCCGGAAAGCCTCAATTTTGGCAAAGCAGGAGCATGCAGAGAATGGTTTACAGAATAGTCCAACAATACCAAGTTATATGGCAGCAACTGAATCTGCCAAGGCAAAATTGAGGACACAAGGGTCCCCGAGGTTTGGGCAAGATGAAAGTGAGAGAATCAACTCTGCTGGGCGACACTCTCTGCCATCTTCAACTAACAGTAAAATTAGTTCACACTCACCTAGGACAAACAGATCAGTTCAAGCAGGTGGCAAAGGGGGCCATAGAAGTGACAAAACTGCACCGTCTTCTAGAGGTGGGAATGGGAAGGTTATTCAAGCAGAGTGGAGGAGGTAA | 1752 | 0.415 | MGKSPGKWIKTVLFGKKSSKSNISKGREKLVNKKEAVFASNVSDNGLALEPTLDKIARHEEDLEQENKESENLLPGNQEVDNIGSVDQDAPPDPEKIRLEEAATKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLCCMYVIVRLQALVRGGSVRQSNIGFEIHKKCNLFKPLDCKLGESVRISTKISKLSGNTFICKLLSSSTTIMALHLQYVGGDPNSVLSWLERWSASYFWKPVPQPKKIRDSKSQRKQGNISIGEVQISKSKRTNRKLPIANFESVPVQTNPELEKPKRNFRKISQPSDPEQENPQSELEKVKRNLRKIHNPVVENVILSEVECETPKPHLEKATVIADDAVSEPVVNTTNEKIKKEATLIISNVPDVEITPRPSDNKEVSDIPSSDQMPIESMPLTETTTKEKNTSGDIVKNEPINLPETIFKDENSPLTNGDLTHKEGLTGNENQKSTRKASILAKQEHAENGLQNSPTIPSYMAATESAKAKLRTQGSPRFGQDESERINSAGRHSLPSSTNSKISSHSPRTNRSVQAGGKGGHRSDKTAPSSRGGNGKVIQAEWRR. | 584 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca3g03073 | 583 | MobiDBLite | consensus disorder prediction | 248 | 322 | - | - | |
| Seca3g03073 | 583 | MobiDBLite | consensus disorder prediction | 445 | 583 | - | - | |
| Seca3g03073 | 583 | ProSiteProfiles | IQ motif profile. | 123 | 145 | IPR000048 | GO:0005515 | |
| Seca3g03073 | 583 | SMART | iq_5 | 98 | 120 | IPR000048 | GO:0005515 | |
| Seca3g03073 | 583 | SMART | iq_5 | 121 | 142 | IPR000048 | GO:0005515 | |
| Seca3g03073 | 583 | PANTHER | IQ-DOMAIN 5-RELATED | 1 | 541 | - | - | |
| Seca3g03073 | 583 | MobiDBLite | consensus disorder prediction | 528 | 552 | - | - | |
| Seca3g03073 | 583 | MobiDBLite | consensus disorder prediction | 70 | 84 | - | - | |
| Seca3g03073 | 583 | MobiDBLite | consensus disorder prediction | 393 | 414 | - | - | |
| Seca3g03073 | 583 | Coils | Coil | 49 | 73 | - | - | |
| Seca3g03073 | 583 | ProSiteProfiles | IQ motif profile. | 99 | 127 | IPR000048 | GO:0005515 | |
| Seca3g03073 | 583 | MobiDBLite | consensus disorder prediction | 484 | 499 | - | - | |
| Seca3g03073 | 583 | MobiDBLite | consensus disorder prediction | 259 | 292 | - | - | |
| Seca3g03073 | 583 | MobiDBLite | consensus disorder prediction | 447 | 476 | - | - | |
| Seca3g03073 | 583 | MobiDBLite | consensus disorder prediction | 62 | 94 | - | - | |
| Seca3g03073 | 583 | Pfam | IQ calmodulin-binding motif | 101 | 120 | IPR000048 | GO:0005515 | |
| Seca3g03073 | 583 | Pfam | IQ calmodulin-binding motif | 123 | 140 | IPR000048 | GO:0005515 | |
| Seca3g03073 | 583 | Gene3D | - | 97 | 146 | - | - | |
| Seca3g03073 | 583 | Pfam | Protein of unknown function (DUF4005) | 481 | 562 | IPR025064 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca3g03073 | Seca-Chr3 | 55175006 | 55182440 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca3g03073 | 1 | 583 | IQD Protein Family | AT1G74690 | 44.391 | 4.61e-127 | 384 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca3g03073 | - | - | gmx:100786022 | 860.136 |