LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca3g03066	ATGGAGTTTGATTCAGAAAGATCTGGTCATGAAGGTGAAGGAGCCAAGGCTGAGAAGAGAAGAGAATCTAGCGTTGGTAATGATGAAGATCTTCGTGAACAAGAGGAACCAGCCATGACTAATATTGAAAGATCCACGGCCGGGCCAAATGTATCCTCAACCAAGAAGGAAGAGGTTGATGAACTTGAAAATGCCAAAGCTGAAATGGGTGGAGTGATGGAAGAAAATCAACGATTGAAGATGTGTTTGAACCGAATACTGAATGATTACCGTACACTGCAAATGCAATTCCACAATATAGTTGAACAAGAGACAAAAAAATCTTCAGATAAAGAAAAAAACAATGACCATATTCAAGAAACAATAGACGAACCAGAGCTTGTTTCCCTGAGTCTTGGAAGACTTCCAAGAAACAACATTGAGAAATCTAAAGTCTCTAAACCATTGAAAGAGGAAGAAAATAAAGAAGGCTTAGCTCTTGGACTTGACTGCAAATTTGAAACATCAAAATCTGGAAGCACAACTGAACATTTGCCAAATGCAAGCCCTGCCAATAGTTCTGAAGTACCAAAGGAAGAAGCTGGGGAGACTTGGCCACCAAGTAAGGCACAAAAGACAATTAGAGTCACTGCAGAGGATGAAGTTTCTCAACAAAATCCTGCAAAGAAAGCTAGAGTTTGTGTGAGAGCAAGATGTGACACCCCAACTCAGTTGAATGATGGTTGCCAATGGAGAAAATATGGACAGAAAATTTCAAAGGGAAATCCTTGTCCTCGAGCTTACTATCGTTGCACAGTTGCACCATCATGCCCCGTGAGAAAGCAGGTGCAAAGATGTGCACAGGACATGACCATTTTAATCACCACTTATGAAGGGAACCACAATCACCCTCTCCCTCTTTCAGCTACTGCAATGGCTTCCACCACTTCTGCAGCTGCTTCCATGCTATTATCTGGCTCATCAACCTCTCACTCTGGATCAATACCTTCAACAAACATGACCACCACATCTTCTGCTGATCTTCACGGAATGAACTTTTATCTCTCAGATAGTTCCAAATCAAAGCAATTCTACCTCTCCCATCCTGCACTATCACCTTCCCCATCACACCCAACCATCACTCTTGACCTCACTTCCAATCCAGCCTCATCCTCAGTTCCTTTTGGTAGATTCACTTCAAACTACAACCCCCCAAGATACCCTTCATCCACAAGCCTCAACTTCAGTTCCTCTGAATCCAATACAATATCTTGGAACAATGGTTTACTCAGCTACAGTCAACAACCATACAACAACAGGAACCTCCTTAGCTCCATTAACCTTGGAAGACAACCAATAATGGAAAACAATATCTTCAACTCCTACATGCAAAGAAACAACAACAACAATAATCCAATTCCAACCCCACCTCAACATTCTCTACCAGCTGACACAATAGCTGCAGCAACAAAAGCAATCACTGCTGACCCAACTTTTCAGTCAGCTTTGGCAGCAGCACTTACATCAATAATTGGCACAGGAAGTGGCACTTCTGGAAGCTCACAAGGAAACAACAATGTGGGAGAAAATTTGGGTCATAAAACAAAATGGGGTGAGTTGTTTTCGTCAGCTTCTACGACCTTGCCTGCTTCGAGTTCCAAAGTCAGTGGCTGTGCATCAAGCTTCTTGAACAAAGCACCTGCTACTAATACACAGACGGGAAGTTTGATGTTTCTACAGCCACCTTTGCCATTTTCTAGCACCAAAAGTGCATCTGCGTCTCCTGGTGATGACAGAGACAACGCCAATTAA	1791	0.426	MEFDSERSGHEGEGAKAEKRRESSVGNDEDLREQEEPAMTNIERSTAGPNVSSTKKEEVDELENAKAEMGGVMEENQRLKMCLNRILNDYRTLQMQFHNIVEQETKKSSDKEKNNDHIQETIDEPELVSLSLGRLPRNNIEKSKVSKPLKEEENKEGLALGLDCKFETSKSGSTTEHLPNASPANSSEVPKEEAGETWPPSKAQKTIRVTAEDEVSQQNPAKKARVCVRARCDTPTQLNDGCQWRKYGQKISKGNPCPRAYYRCTVAPSCPVRKQVQRCAQDMTILITTYEGNHNHPLPLSATAMASTTSAAASMLLSGSSTSHSGSIPSTNMTTTSSADLHGMNFYLSDSSKSKQFYLSHPALSPSPSHPTITLDLTSNPASSSVPFGRFTSNYNPPRYPSSTSLNFSSSESNTISWNNGLLSYSQQPYNNRNLLSSINLGRQPIMENNIFNSYMQRNNNNNNPIPTPPQHSLPADTIAAATKAITADPTFQSALAAALTSIIGTGSGTSGSSQGNNNVGENLGHKTKWGELFSSASTTLPASSSKVSGCASSFLNKAPATNTQTGSLMFLQPPLPFSSTKSASASPGDDRDNAN.	597

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca3g03066	596	SUPERFAMILY	WRKY DNA-binding domain	234	299	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Seca3g03066	596	MobiDBLite	consensus disorder prediction	103	123	-	-
	Seca3g03066	596	Pfam	WRKY DNA -binding domain	239	297	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Seca3g03066	596	ProSiteProfiles	WRKY domain profile.	233	299	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Seca3g03066	596	MobiDBLite	consensus disorder prediction	169	187	-	-
	Seca3g03066	596	SMART	WRKY_cls	238	298	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Seca3g03066	596	MobiDBLite	consensus disorder prediction	1	39	-	-
	Seca3g03066	596	MobiDBLite	consensus disorder prediction	103	125	-	-
	Seca3g03066	596	MobiDBLite	consensus disorder prediction	1	63	-	-
	Seca3g03066	596	FunFam	probable WRKY transcription factor 31	222	300	-	-
	Seca3g03066	596	MobiDBLite	consensus disorder prediction	567	596	-	-
	Seca3g03066	596	Gene3D	WRKY domain	222	300	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Seca3g03066	596	Coils	Coil	55	75	-	-
	Seca3g03066	596	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	43	517	IPR044810	GO:0003700
	Seca3g03066	596	MobiDBLite	consensus disorder prediction	169	216	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca3g03066	Seca-Chr3	54884975	54889704	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca3g03066	69	506	WRKY Transcription Factor Family	AT5G15130	41.701	3.09e-81	262

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Seca3g03066		WRKY	1.4e-23	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca3g03066	-		-	gmx:100804403	686.026