Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03048 ATGAGTAGGTGTTTTGAGAAGGTTATTTCATTACCTCAACCTCGTAGAATCATGATTTTTGAAAAGGTTATCACAAAGTCTCAATCTCGTGCTGGACAGACACTGCCAATCCCCAGGGATTTTATCAAGGGTTTTATTCGTAACAGCTGGAAAGAGTTGACTCTGTGTATTGATGGGGGGCGTTGTTATTTTTGTAAGTTGCTGTGGCGTGAAAGAATTGGGGAGAGTTTCAAAGATTGTCACCTGGGGAATATTTGGTACAAATTTGTGAAAGATATGAGACTGAGAACAGGGGACAAGGTCGTTTTTAAGACCATAATTGCAGGGTTGAATCATCTTAATATTAGCATAGTACGCAAAGGGAGTTAG 369 0.3984 MSRCFEKVISLPQPRRIMIFEKVITKSQSRAGQTLPIPRDFIKGFIRNSWKELTLCIDGGRCYFCKLLWRERIGESFKDCHLGNIWYKFVKDMRLRTGDKVVFKTIIAGLNHLNISIVRKGS. 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03048 122 ProSiteProfiles B3 DNA-binding domain profile. 20 121 IPR003340 GO:0003677
Seca3g03048 122 SMART B3_2 20 121 IPR003340 GO:0003677
Seca3g03048 122 Pfam B3 DNA binding domain 20 120 IPR003340 GO:0003677
Seca3g03048 122 SUPERFAMILY DNA-binding pseudobarrel domain 16 106 IPR015300 -
Seca3g03048 122 Gene3D - 3 121 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03048 Seca-Chr3 54522034 54524252 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca3g03048 B3 4.4e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03048 - K10746 lja:Lj4g3v0336770.1 80.1073