Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03041 ATGGGTCATGTAGCGTGGATGCTGTTGGTGATTGCCACCACTGTTTTCTGCCCTTCGTCTCTTGCTCTCCCCCAAGACGGACTCACCTTGTTGGAAATCAAGAGCACTTTGAATGACACTAGGAATTTTCTCAGCAACTGGCAAGAGTCTGATGAGTCTCACTGTACATGGACTGGTATCACTTGTCATCCCGGTGAACAACGAGTTCGCTCAATAAATTTGCCTTACATGCAACTGGGGGGAATTATATCTCCCAGCATTGGCAAACTCAGTAGGCTACATAGACTGGCACTTCATCAGAATGGCTTACATGGAATTATTCCCAATGAAATTAGCAATTGTACTGAGCTTAGAGCACTGTACTTGAGGGCTAATTATTTCCAAGGAGGCATCCCATCAGATATTGGCAATCTTACTTATTTGCATATACTGGATTTATCAAGCAACTCATTAAAGGGTGCTATACCTTCTTCTATTGGCCGTCTCACACATTTGCGAGCTCTGAACTTGTCAACTAATTTCTTTTCTGGTGAAATCCCTGATATTGGAGTGCTAAGCACCTTTGGAAACAATACGTTTGTTGGGAATTTGGATCTTTGTGGCCGGCAAGTTCAAAAACCATGTCGGACATCACTTGGTTTCCCTGTGGTGCTACCACATGCTGAAAGTGATGAAGCTGCAGTCCCTACCAAAAGATCTTCACATTATATAAAGTGGGTGCTAATTGGTGTAATAATAACGATGGGCATTGCACTTGTCATAATCCTTTCATTACTCTGGATTTGTTTGCTATCAAAAAAGGAAAGAGCTGCTAGGAGATACAAGGAAATAAAGAAACAAGTCAATCAAGAATCAAATAGAAAAGAAGGCACAAAACTTATTACCTTCCATGGTGATCTTCCATACTCATCATCTGAGATCATAGAAAAGTTGGAGTCTCTTGATGAAGACGATGTGGTAGGTTCTGGAGGATTTGGTACTGTTTACCGAATGGTGATGAATGACTGTGGTACATTTGCTGTTAAGCGGATTGATAGAAGTCGCGAAGGTTCTGATAAGGGGTTTGAAAGGGAACTAGAGATCTTGGGTAACATCAAGCACATAAATCTAGTAAACCTGCGTGGTTACTGCAGGCTCCCTTCTACAAAGCTTCTAATCTATGATTATTTGGCCATGGGCAGCTTAGATGATCTCTTGCATGGAACCCTTTCTACTTTAGAAAACACTGAACAACTACTGAATTGGAGTACTCGCCTAAAGATAGCCCTTGGTTCTGCCCGGGGGTTAGCTTACTTGCACCATGACTGCTGCCCAAAAATTGTGCATCGTGACATAAAATCCAGCAACATCCTTCTTGATGAAAACATGGAGCCTCATGTCTCTGATTTTGGTCTTGCAAAGCTTTTGGTTGATGAAGATGCTCATGTTACAACAGTGGTTGCTGGCACATTTGGCTATTTGGCACCAGAGTATCTACAAAGTGGAAGAGCCACTGAGAAGTCAGATGTGTATAGCTTTGGAGTTCTATTGCTAGAACTTGTAACTGGAAAGAGACCTACAGATCCTTCCTTTGCAAAGAGAGGTTTAAATGTTGTTGGTTGGATGAACACGTTACTGAGAGAAAACAGATTGGAAGATGTGGTAGACAAAAGATGCAGTGATGCAGAATGGGAATCTGTTGAAGTAATTCTTGAGCTAGCAGCAAGTTGTACAGATGCAAATGCAGATGATCGTCCTACAATGAATCAGGTATTACAGTTGCTGGAACAAGAGGTCATGTCTCCTTGCCCAAGTGATTTTTACGAGTCACATTCAGATCACTGTTAG 1827 0.4193 MGHVAWMLLVIATTVFCPSSLALPQDGLTLLEIKSTLNDTRNFLSNWQESDESHCTWTGITCHPGEQRVRSINLPYMQLGGIISPSIGKLSRLHRLALHQNGLHGIIPNEISNCTELRALYLRANYFQGGIPSDIGNLTYLHILDLSSNSLKGAIPSSIGRLTHLRALNLSTNFFSGEIPDIGVLSTFGNNTFVGNLDLCGRQVQKPCRTSLGFPVVLPHAESDEAAVPTKRSSHYIKWVLIGVIITMGIALVIILSLLWICLLSKKERAARRYKEIKKQVNQESNRKEGTKLITFHGDLPYSSSEIIEKLESLDEDDVVGSGGFGTVYRMVMNDCGTFAVKRIDRSREGSDKGFERELEILGNIKHINLVNLRGYCRLPSTKLLIYDYLAMGSLDDLLHGTLSTLENTEQLLNWSTRLKIALGSARGLAYLHHDCCPKIVHRDIKSSNILLDENMEPHVSDFGLAKLLVDEDAHVTTVVAGTFGYLAPEYLQSGRATEKSDVYSFGVLLLELVTGKRPTDPSFAKRGLNVVGWMNTLLRENRLEDVVDKRCSDAEWESVEVILELAASCTDANADDRPTMNQVLQLLEQEVMSPCPSDFYESHSDHC. 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03041 608 SUPERFAMILY L domain-like 23 207 - -
Seca3g03041 608 Pfam Protein kinase domain 317 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g03041 608 ProSitePatterns Protein kinases ATP-binding region signature. 320 342 IPR017441 GO:0005524
Seca3g03041 608 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 390 599 - -
Seca3g03041 608 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 23 185 - -
Seca3g03041 608 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 71 589 - -
Seca3g03041 608 Pfam Leucine rich repeat N-terminal domain 24 62 IPR013210 -
Seca3g03041 608 SMART serkin_6 314 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g03041 608 Coils Coil 264 287 - -
Seca3g03041 608 ProSitePatterns Serine/Threonine protein kinases active-site signature. 440 452 IPR008271 GO:0004672|GO:0006468
Seca3g03041 608 SUPERFAMILY Protein kinase-like (PK-like) 294 589 IPR011009 -
Seca3g03041 608 Gene3D Ribonuclease Inhibitor 24 210 IPR032675 -
Seca3g03041 608 Gene3D Phosphorylase Kinase; domain 1 273 389 - -
Seca3g03041 608 Gene3D Transferase(Phosphotransferase) domain 1 390 597 - -
Seca3g03041 608 ProSiteProfiles Protein kinase domain profile. 314 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03041 Seca-Chr3 54461637 54467530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03041 5 597 Receptor kinase-like Gene Family AT2G35620 48.567 0.0 556
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Seca3g03041 Pkinase 3.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03041 - - gmx:100805042 1088.56