Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03039 ATGCCCACTGTTCTCTCAGTGACCATGGCTATTGGTTCTCATAGGCTATCTCAGCAGGGGGCTATCACAAAGAGAATGACAGCTATTGAAGAGATGGCAGGCATGGATGTGCTTTGCAGTGATAAGACTGGGACCTTAACATTAAATAAGCTTACTGTTGACAAAAATCTTATTGAGGTATTTGCAAAAGGAGTGGATGCAGATACTGTTGTTTTGATGGCAGCTCGAGCTTCGAGGCTTGAGAATCAAGATGCAATAGATTCTGCCATAGTTGGGATGTTGGCTGATCCAAAGGAGGCCCGAGTTGGTATCCAAGAAATACATTTTCTTCCTTTCAATCCCACTGATAAGCGAACAGCATTAACTTATATTGATCGTGATGGTAAAATGCATAGAGTTAGCAAAGGTGCACCAGAACAGATCCTTAATCTTGCACACAATAAATCAGACATTGAACGTAGAGTTCATGCAGTGATAGATAAGTTTGCAGAGCGTGGTTTGCGATCCCTTGCAGTAGCATACCAGGAAGTTCCAGATGGAAGGAAAGAGAGTGCTGGAGGCCCATGGCAGTTTATTGGCCTTATGCCTCTGTTTGACCCACCTAGGCATGACAGTGCAGAAACAATACGGAGGGCACTAAACCTTGGAGTAAATGTCAAAATGATTACAGGGGATCAGCTAGCTATAGGAAAGGAAACAGGCCGTCGCTTGGGAATGGGTACCAATATGTATCCTTCATCTGCATTGCTTGGGCAGGATAAAGATGAATCCATTTCTGCCTTACCCATCGACGAACTAATAGAAAAAGCTGATGGATTTGCTGGTGTTTTTCCTGAGCACAAGTATGAGATTGTGAAACGCTTACAAGCTAGGAAACACATCTGTGGAATGACTGGTGATGGAGTGAATGATGCACCTGCACTCAAGAAGGCAGACATTGGTATAGCTGTTGCTGATGCGACTGATGCAGCTCGAAGTGCATCTGATATTGTTTTAACAGAACCTGGTCTAAGTGTTATTATTAGTGCTGTGTTGACCAGCCGAGCTATCTTCCAGAGAATGAAAAATTATACAATTTATGCTGTCTCAATTACAATTCGTATTGTGCTTGGTTTCATGTTGCTGGCTCTCATATGGAAGTTTGACTTTCCACCTTTTATGGTGCTCATTATCGCCATTCTAAATGATGGTTCGGAAGGCATCTATGAAATTGCAGGTACCATCATGACAATTTCAAAAGATCGAGTAAAACCATCGCCTCTGCCAGATAGCTGGAAGCTTGCGGAGATATTTACTACTGGCATTGTACTTGGAAGTTACTTGGCAATGATGACAGTCATATTCTTTTGGGCAGCATACAAAACAGATTTCTTCCCGCAAGTATTTGGAGTCTCTACTCTTGAGAAAACTGCTCATGATGATTTCCGAAAACTAGCCTCTGCTATCTATCTTCAAGTGAGCACTATAAGTCAGGCCCTAATATTTGTGACTCGGTCTCGAGGTTGGTCATATGTTGAACGCCCTGGTTTTCTGCTGGTGGCAGCTTTTGTGGTTGCTCAGTTGATTGCTACTTTGATTGCAGTATATGCAAACTGGAGCTTTGCTGCCATTGAGGGCATAGGTTGGGGTTGGGCAGGTGTAATATGGTTATATAACATAATATTCTACATCCCACTTGACATCATTAAGTTTTTAATTAGATATGCTTTGAGTGGGAGGGCTTGGGAGCTTGTCATTGAGCAAAGGATTGCATTCACAAGACAAAAGGACTTTGGGAAGGAACAACGGGAACTTCAATGGGCACATGCACAAAGAACATTGCATGGATTACAACCACCTGACACCAAGATGTTCACTGAGCGCACACATTTCAATGAACTCAATCAAATGGCTGAAGAAGCTAAAAGGAGAGCCGAAATTGCAAGGTTAAGAGAACTGCATACACTTAAAGGTCATGTAGAATCAGTTTTGAAGTTGAAGGGGATTGATGTAGACACAATTCAGCAAGCATATACAGTCTGA 2022 0.4243 MPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEVFAKGVDADTVVLMAARASRLENQDAIDSAIVGMLADPKEARVGIQEIHFLPFNPTDKRTALTYIDRDGKMHRVSKGAPEQILNLAHNKSDIERRVHAVIDKFAERGLRSLAVAYQEVPDGRKESAGGPWQFIGLMPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQDKDESISALPIDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFPPFMVLIIAILNDGSEGIYEIAGTIMTISKDRVKPSPLPDSWKLAEIFTTGIVLGSYLAMMTVIFFWAAYKTDFFPQVFGVSTLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRGWSYVERPGFLLVAAFVVAQLIATLIAVYANWSFAAIEGIGWGWAGVIWLYNIIFYIPLDIIKFLIRYALSGRAWELVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDTKMFTERTHFNELNQMAEEAKRRAEIARLRELHTLKGHVESVLKLKGIDVDTIQQAYTV. 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03039 673 Coils Coil 624 644 - -
Seca3g03039 673 Pfam haloacid dehalogenase-like hydrolase 35 312 - -
Seca3g03039 673 SUPERFAMILY HAD-like 35 345 IPR036412 -
Seca3g03039 673 SFLD Haloacid Dehalogenase 21 350 - -
Seca3g03039 673 PRINTS P-type cation-transporting ATPase superfamily signature 193 204 - -
Seca3g03039 673 PRINTS P-type cation-transporting ATPase superfamily signature 298 317 - -
Seca3g03039 673 PRINTS P-type cation-transporting ATPase superfamily signature 321 333 - -
Seca3g03039 673 PRINTS P-type cation-transporting ATPase superfamily signature 39 53 - -
Seca3g03039 673 PRINTS P-type cation-transporting ATPase superfamily signature 215 225 - -
Seca3g03039 673 FunFam Plasma membrane ATPase 51 198 - -
Seca3g03039 673 FunFam Plasma membrane ATPase 192 346 - -
Seca3g03039 673 SUPERFAMILY Calcium ATPase, transmembrane domain M 1 570 IPR023298 -
Seca3g03039 673 ProSitePatterns E1-E2 ATPases phosphorylation site. 41 47 IPR018303 -
Seca3g03039 673 SFLD p-type atpase 21 350 IPR044492 -
Seca3g03039 673 Gene3D - 36 335 IPR023214 -
Seca3g03039 673 Gene3D - 1 538 - -
Seca3g03039 673 Gene3D - 622 673 - -
Seca3g03039 673 NCBIfam HAD-IC family P-type ATPase 273 386 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g03039 673 PANTHER CALCIUM-TRANSPORTING ATPASE 1 606 - -
Seca3g03039 673 PRINTS H+-transporting ATPase (proton pump) signature 483 504 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g03039 673 PRINTS H+-transporting ATPase (proton pump) signature 270 286 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g03039 673 PRINTS H+-transporting ATPase (proton pump) signature 298 314 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g03039 673 PRINTS H+-transporting ATPase (proton pump) signature 155 173 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g03039 673 PRINTS H+-transporting ATPase (proton pump) signature 329 354 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g03039 673 NCBIfam plasma-membrane proton-efflux P-type ATPase 1 529 IPR006534 GO:0008553|GO:0016020|GO:0120029
Seca3g03039 673 Gene3D - 51 198 IPR023299 GO:0000166
Seca3g03039 673 FunFam ATPase 4 plasma membrane-type 283 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03039 Seca-Chr3 54438926 54443789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03039 1 673 Primary Pumps ATPases AT5G62670 92.273 0.0 1286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03039 K01535 - gmx:100782459 1239.17