Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03038 ATGGGCATGGATTACTATAACATACTGAAAGTGAATCGAAACGCCAGCGACGAGGATTTAAAAAAGGCCTACAAGAGGCTCGCCATGATATGGCACCCTGACAAGAACCCCGTTAACAAGAGCGAGGCCGAAGCCAAATTCAAGCGAATCTCCGAAGCCTACGACGTTCTCAGCGACCCGCAGAAGCGTCAGATCTACGATCTCTACGGCGAGGAGGCACTCAAGTCTGGTCAGTTTCCGCCACCTCCGCAATCTTCTTCTTCTTCGTCCTCTTCGCGCGCCTACCAGAACCACCACCAACGCCAAAACCCTACCTTCCGCTTCAACCCCCGCGACGCCGACGACATTTACGCCGAGTTCTTTGGCGCCGACGGCGCCGACGCCGGCGGAGCCGGGCCCCGCAGGGACGGGTTCTTCAGGACCTCAAATGGCGCTGCGTTTGGCGGACCGGGAAGGAAGGCACCGGCGGTGGAGAACGTGTTACCGTGTAGCTTGGAAGACCTTTACAAAGGTGTCAAGAAGAAGATGAAGATCTCAAGGAATGTCTATGACGCTTTTGGCAAGTGTCGGAGTGTGGAGGAGATTTTGACTATTGAGATAAAACCTGGCTGGAAGAAAGGAACAAAGATTACCTTCCCAGAGAAGGGTAACCAGGATCCTGGTGTCATCCCTGCTGATCTTATTTTTGTGATAGATGAGAAACCACATGCTCTTTATAGAAGGGATGGTAATGATTTGGTGATCAACCAAGAGATAACTCTTCTTGAGGCCCTTACAGGTAAAACCTTGAACCTCACTACCTTGGATGGAAGGAGTCTCATGATCCCATTGACAGATATCGTCAAACCTGGTGCTGAGGTTGTTGTCCCTAATGAAGGAATGCCCATATCAAAAGAACCTGGGAGGAAGGGGAATTTGAGAATTAAGCTTGACGTCAAGTATCCTTCAAGGCTAACTCCAGAGCAAAAATCTGATCTGAGGAGAGTTTTGGGTGGAATCTCATAA 1005 0.5025 MGMDYYNILKVNRNASDEDLKKAYKRLAMIWHPDKNPVNKSEAEAKFKRISEAYDVLSDPQKRQIYDLYGEEALKSGQFPPPPQSSSSSSSSRAYQNHHQRQNPTFRFNPRDADDIYAEFFGADGADAGGAGPRRDGFFRTSNGAAFGGPGRKAPAVENVLPCSLEDLYKGVKKKMKISRNVYDAFGKCRSVEEILTIEIKPGWKKGTKITFPEKGNQDPGVIPADLIFVIDEKPHALYRRDGNDLVINQEITLLEALTGKTLNLTTLDGRSLMIPLTDIVKPGAEVVVPNEGMPISKEPGRKGNLRIKLDVKYPSRLTPEQKSDLRRVLGGIS. 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03038 334 FunFam DNAJ heat shock family protein 235 330 - -
Seca3g03038 334 Pfam DnaJ domain 4 67 IPR001623 -
Seca3g03038 334 CDD DnaJ_C 161 318 - -
Seca3g03038 334 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Seca3g03038 334 CDD DnaJ 4 59 IPR001623 -
Seca3g03038 334 SUPERFAMILY HSP40/DnaJ peptide-binding domain 239 324 IPR008971 GO:0006457|GO:0051082
Seca3g03038 334 SUPERFAMILY Chaperone J-domain 3 84 IPR036869 -
Seca3g03038 334 Gene3D - 236 316 - -
Seca3g03038 334 Pfam DnaJ C terminal domain 160 315 IPR002939 -
Seca3g03038 334 PRINTS DnaJ domain signature 24 39 IPR001623 -
Seca3g03038 334 PRINTS DnaJ domain signature 62 81 IPR001623 -
Seca3g03038 334 PRINTS DnaJ domain signature 6 24 IPR001623 -
Seca3g03038 334 PRINTS DnaJ domain signature 42 62 IPR001623 -
Seca3g03038 334 MobiDBLite consensus disorder prediction 74 110 - -
Seca3g03038 334 Gene3D DnaJ domain 2 131 IPR036869 -
Seca3g03038 334 Gene3D - 156 234 - -
Seca3g03038 334 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 3 330 - -
Seca3g03038 334 FunFam DnaJ subfamily B member 13 3 131 - -
Seca3g03038 334 SMART dnaj_3 3 62 IPR001623 -
Seca3g03038 334 FunFam Dnaj homolog subfamily b member 153 234 - -
Seca3g03038 334 SUPERFAMILY HSP40/DnaJ peptide-binding domain 160 236 IPR008971 GO:0006457|GO:0051082
Seca3g03038 334 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Seca3g03038 334 MobiDBLite consensus disorder prediction 79 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03038 Seca-Chr3 54408397 54417128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03038 5 74 C2H2 Transcription Factor Family AT1G74250 35.135 4.29e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03038 K09510 - gmx:100781572 546.969